JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:28 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pvma3.name2015-04-17 17:54 0 Job name flag file
[ ]jp_Y5E3Pd7.align2015-04-17 19:27 152 PSIBLAST alignment in FASTA format
[TXT]jp_Y5E3Pd7.als2015-04-17 19:27 1.5KAlscript command file for PS/PDF output
[ ]jp_Y5E3Pd7.blast.gz2015-04-17 19:27 1.7KCompressed PSIBLAST output file
[TXT]jp_Y5E3Pd7.coils.csv2015-04-17 19:27 246 COILS output in CSV format
[ ]jp_Y5E3Pd7.coilseq.lupas_142015-04-17 19:27 1.5KCOILS output, window length 14
[ ]jp_Y5E3Pd7.coilseq.lupas_212015-04-17 19:27 1.5KCOILS output, window length 21
[ ]jp_Y5E3Pd7.coilseq.lupas_282015-04-17 19:27 1.5KCOILS output, window length 28
[ ]jp_Y5E3Pd7.concise2015-04-17 19:27 1.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_Y5E3Pd7.concise.blc2015-04-17 19:27 786 BLC format prediction and alignment data
[ ]jp_Y5E3Pd7.concise.fasta2015-04-17 19:27 622 Prediction: coiled-coil, solvent, alignment
[ ]jp_Y5E3Pd7.concise.pdf2015-04-17 19:27 5.9KPDF prediction and alignment data
[ ]jp_Y5E3Pd7.concise.ps2015-04-17 19:27 71KPrediction: coiled-coil, solvent, alignment
[ ]jp_Y5E3Pd7.fasta2015-04-17 19:26 49 Input query sequence in FASTA format
[ ]jp_Y5E3Pd7.full_MSA.fasta2015-04-17 19:27 260 Full MSA before JPred filters in FASTA
[TXT]jp_Y5E3Pd7.full_MSA.fasta.noGaps.html2015-04-17 19:27 960 Full MSA before JPred filters in FASTA
[TXT]jp_Y5E3Pd7.full_MSA.fasta.withGaps.html2015-04-17 19:27 960 Full MSA before JPred filters in FASTA
[ ]jp_Y5E3Pd7.hmm2015-04-17 19:27 6.8KHHMer2 profile of the alignment
[TXT]jp_Y5E3Pd7.html2015-04-17 19:27 5.2KHTML prediction and alignment data
[ ]jp_Y5E3Pd7.input2015-04-17 17:54 43 Raw input data for analysis
[ ]jp_Y5E3Pd7.jalview2015-04-17 19:27 1.5KJalview annotation file for alignment
[ ]jp_Y5E3Pd7.jnet2015-04-17 19:27 1.4KJnet secondary structure output
[TXT]jp_Y5E3Pd7.profile2015-04-17 19:27 6.2KPSIBLAST profile from alignment
[ ]jp_Y5E3Pd7.pssm2015-04-17 19:27 7.7KPSIBLAST PSSM for Jnet
[TXT]jp_Y5E3Pd7.results.html2016-02-15 12:18 25KJPred results page
[TXT]jp_Y5E3Pd7.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Y5E3Pd7.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Y5E3Pd7.seq2015-04-17 17:54 49 Sequence data file
[TXT]jp_Y5E3Pd7.simple.html2015-04-17 19:27 1.0KBrief HTML: sequence and prediction only
[TXT]jp_Y5E3Pd7.svg.html2015-04-17 19:28 17KJalview SVG summary of results
[ ]jp_Y5E3Pd7.tar.gz2015-04-17 19:28 21KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.