JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1q6za2.name2015-04-17 17:54 0 Job name flag file
[ ]jp_cqVYISo.align2015-04-17 19:37 143KPSIBLAST alignment in FASTA format
[TXT]jp_cqVYISo.als2015-04-17 19:37 3.1KAlscript command file for PS/PDF output
[ ]jp_cqVYISo.blast.gz2015-04-17 19:36 7.7MCompressed PSIBLAST output file
[TXT]jp_cqVYISo.coils.csv2015-04-17 19:37 1.1KCOILS output in CSV format
[ ]jp_cqVYISo.coilseq.lupas_142015-04-17 19:37 7.6KCOILS output, window length 14
[ ]jp_cqVYISo.coilseq.lupas_212015-04-17 19:37 7.6KCOILS output, window length 21
[ ]jp_cqVYISo.coilseq.lupas_282015-04-17 19:37 7.6KCOILS output, window length 28
[ ]jp_cqVYISo.concise2015-04-17 19:37 283KPrediction: coiled-coil, solvent, alignment
[ ]jp_cqVYISo.concise.blc2015-04-17 19:37 144KBLC format prediction and alignment data
[ ]jp_cqVYISo.concise.fasta2015-04-17 19:37 145KPrediction: coiled-coil, solvent, alignment
[ ]jp_cqVYISo.concise.pdf2015-04-17 19:38 1.0MPDF prediction and alignment data
[ ]jp_cqVYISo.concise.ps2015-04-17 19:37 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_cqVYISo.fasta2015-04-17 19:26 195 Input query sequence in FASTA format
[ ]jp_cqVYISo.full_MSA.fasta2015-04-17 19:37 15MFull MSA before JPred filters in FASTA
[TXT]jp_cqVYISo.full_MSA.fasta.noGaps.html2015-04-17 19:38 3.0MFull MSA before JPred filters in FASTA
[TXT]jp_cqVYISo.full_MSA.fasta.withGaps.html2015-04-17 19:38 53MFull MSA before JPred filters in FASTA
[ ]jp_cqVYISo.hmm2015-04-17 19:37 34KHHMer2 profile of the alignment
[TXT]jp_cqVYISo.html2015-04-17 19:37 302KHTML prediction and alignment data
[ ]jp_cqVYISo.input2015-04-17 17:54 187 Raw input data for analysis
[ ]jp_cqVYISo.jalview2015-04-17 19:37 4.4KJalview annotation file for alignment
[ ]jp_cqVYISo.jnet2015-04-17 19:37 6.6KJnet secondary structure output
[TXT]jp_cqVYISo.profile2015-04-17 19:35 29KPSIBLAST profile from alignment
[ ]jp_cqVYISo.pssm2015-04-17 19:37 39KPSIBLAST PSSM for Jnet
[TXT]jp_cqVYISo.results.html2016-02-15 12:18 83KJPred results page
[TXT]jp_cqVYISo.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_cqVYISo.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_cqVYISo.seq2015-04-17 17:54 195 Sequence data file
[TXT]jp_cqVYISo.simple.html2015-04-17 19:37 1.6KBrief HTML: sequence and prediction only
[TXT]jp_cqVYISo.svg.html2015-04-17 19:38 75KJalview SVG summary of results
[ ]jp_cqVYISo.tar.gz2015-04-17 19:38 15MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.