JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:39 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1qmha1.name2015-04-17 19:09 0 Job name flag file
[ ]jp_ymClwl6.align2015-04-17 21:39 40KPSIBLAST alignment in FASTA format
[TXT]jp_ymClwl6.als2015-04-17 21:39 2.1KAlscript command file for PS/PDF output
[ ]jp_ymClwl6.blast.gz2015-04-17 21:39 110KCompressed PSIBLAST output file
[TXT]jp_ymClwl6.coils.csv2015-04-17 21:39 600 COILS output in CSV format
[ ]jp_ymClwl6.coilseq.lupas_142015-04-17 21:39 4.0KCOILS output, window length 14
[ ]jp_ymClwl6.coilseq.lupas_212015-04-17 21:39 4.0KCOILS output, window length 21
[ ]jp_ymClwl6.coilseq.lupas_282015-04-17 21:39 4.0KCOILS output, window length 28
[ ]jp_ymClwl6.concise2015-04-17 21:39 80KPrediction: coiled-coil, solvent, alignment
[ ]jp_ymClwl6.concise.blc2015-04-17 21:39 41KBLC format prediction and alignment data
[ ]jp_ymClwl6.concise.fasta2015-04-17 21:39 41KPrediction: coiled-coil, solvent, alignment
[ ]jp_ymClwl6.concise.pdf2015-04-17 21:39 271KPDF prediction and alignment data
[ ]jp_ymClwl6.concise.ps2015-04-17 21:39 4.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_ymClwl6.fasta2015-04-17 21:32 109 Input query sequence in FASTA format
[ ]jp_ymClwl6.full_MSA.fasta2015-04-17 21:39 234KFull MSA before JPred filters in FASTA
[TXT]jp_ymClwl6.full_MSA.fasta.noGaps.html2015-04-17 21:39 103KFull MSA before JPred filters in FASTA
[TXT]jp_ymClwl6.full_MSA.fasta.withGaps.html2015-04-17 21:39 1.0MFull MSA before JPred filters in FASTA
[ ]jp_ymClwl6.hmm2015-04-17 21:39 18KHHMer2 profile of the alignment
[TXT]jp_ymClwl6.html2015-04-17 21:39 120KHTML prediction and alignment data
[ ]jp_ymClwl6.input2015-04-17 19:09 102 Raw input data for analysis
[ ]jp_ymClwl6.jalview2015-04-17 21:39 2.8KJalview annotation file for alignment
[ ]jp_ymClwl6.jnet2015-04-17 21:39 3.5KJnet secondary structure output
[TXT]jp_ymClwl6.profile2015-04-17 21:36 16KPSIBLAST profile from alignment
[ ]jp_ymClwl6.pssm2015-04-17 21:39 20KPSIBLAST PSSM for Jnet
[TXT]jp_ymClwl6.results.html2016-02-15 12:18 47KJPred results page
[TXT]jp_ymClwl6.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ymClwl6.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ymClwl6.seq2015-04-17 19:09 109 Sequence data file
[TXT]jp_ymClwl6.simple.html2015-04-17 21:39 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ymClwl6.svg.html2015-04-17 21:39 39KJalview SVG summary of results
[ ]jp_ymClwl6.tar.gz2015-04-17 21:39 576KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.