A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:29 | 4.7K | JPred server log file |
| README | 2016-02-15 12:18 | 2.1K | Results file descriptions |
| d1r6ja_.name | 2015-04-17 18:30 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_09mT561.align | 2015-04-17 20:28 | 54K | PSIBLAST alignment in FASTA format |
| jp_09mT561.als | 2015-04-17 20:28 | 2.1K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_09mT561.blast.gz | 2015-04-17 20:27 | 5.0M | Compressed PSIBLAST output file |
| jp_09mT561.coils.csv | 2015-04-17 20:28 | 522 | COILS output in CSV format |
| jp_09mT561.coilseq.lupas_14 | 2015-04-17 20:28 | 3.4K | COILS output, window length 14 |
| jp_09mT561.coilseq.lupas_21 | 2015-04-17 20:28 | 3.4K | COILS output, window length 21 |
| jp_09mT561.coilseq.lupas_28 | 2015-04-17 20:28 | 3.4K | COILS output, window length 28 |
| jp_09mT561.concise | 2015-04-17 20:28 | 105K | Prediction: coiled-coil, solvent, alignment |
| jp_09mT561.concise.blc | 2015-04-17 20:28 | 55K | BLC format prediction and alignment data |
| jp_09mT561.concise.fasta | 2015-04-17 20:28 | 55K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_09mT561.concise.pdf | 2015-04-17 20:28 | 347K | PDF prediction and alignment data |
| jp_09mT561.concise.ps | 2015-04-17 20:28 | 5.9M | Prediction: coiled-coil, solvent, alignment |
| jp_09mT561.fasta | 2015-04-17 20:24 | 96 | Input query sequence in FASTA format |
| jp_09mT561.full_MSA.fasta | 2015-04-17 20:28 | 25M | Full MSA before JPred filters in FASTA |
| jp_09mT561.full_MSA.fasta.noGaps.html | 2015-04-17 20:29 | 4.4M | Full MSA before JPred filters in FASTA |
| jp_09mT561.full_MSA.fasta.withGaps.html | 2015-04-17 20:29 | 66M | Full MSA before JPred filters in FASTA |
| jp_09mT561.hmm | 2015-04-17 20:28 | 15K | HHMer2 profile of the alignment |
| jp_09mT561.html | 2015-04-17 20:28 | 166K | HTML prediction and alignment data |
| jp_09mT561.input | 2015-04-17 18:30 | 89 | Raw input data for analysis |
| jp_09mT561.jalview | 2015-04-17 20:28 | 2.5K | Jalview annotation file for alignment |
| jp_09mT561.jnet | 2015-04-17 20:28 | 3.1K | Jnet secondary structure output |
| jp_09mT561.profile | 2015-04-17 20:25 | 13K | PSIBLAST profile from alignment |
| jp_09mT561.pssm | 2015-04-17 20:28 | 18K | PSIBLAST PSSM for Jnet |
| jp_09mT561.results.html | 2016-02-15 12:18 | 43K | JPred results page |
| jp_09mT561.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_09mT561.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_09mT561.seq | 2015-04-17 18:30 | 96 | Sequence data file |
| jp_09mT561.simple.html | 2015-04-17 20:28 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_09mT561.svg.html) | jp_09mT561.svg.html | 2015-04-17 20:29 | 35K | Jalview SVG summary of results |
| jp_09mT561.tar.gz | 2015-04-17 20:29 | 11M | Archive containing complete results |
