JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:31 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r8se_.name2015-04-17 17:19 0 Job name flag file
[ ]jp_SpL238R.align2015-04-17 18:30 135KPSIBLAST alignment in FASTA format
[TXT]jp_SpL238R.als2015-04-17 18:30 2.9KAlscript command file for PS/PDF output
[ ]jp_SpL238R.blast.gz2015-04-17 18:29 4.0MCompressed PSIBLAST output file
[TXT]jp_SpL238R.coils.csv2015-04-17 18:30 1.1KCOILS output in CSV format
[ ]jp_SpL238R.coilseq.lupas_142015-04-17 18:30 7.9KCOILS output, window length 14
[ ]jp_SpL238R.coilseq.lupas_212015-04-17 18:30 7.9KCOILS output, window length 21
[ ]jp_SpL238R.coilseq.lupas_282015-04-17 18:30 7.9KCOILS output, window length 28
[ ]jp_SpL238R.concise2015-04-17 18:30 267KPrediction: coiled-coil, solvent, alignment
[ ]jp_SpL238R.concise.blc2015-04-17 18:30 136KBLC format prediction and alignment data
[ ]jp_SpL238R.concise.fasta2015-04-17 18:30 137KPrediction: coiled-coil, solvent, alignment
[ ]jp_SpL238R.concise.pdf2015-04-17 18:30 896KPDF prediction and alignment data
[ ]jp_SpL238R.concise.ps2015-04-17 18:30 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_SpL238R.fasta2015-04-17 18:26 202 Input query sequence in FASTA format
[ ]jp_SpL238R.full_MSA.fasta2015-04-17 18:29 6.6MFull MSA before JPred filters in FASTA
[TXT]jp_SpL238R.full_MSA.fasta.noGaps.html2015-04-17 18:31 938KFull MSA before JPred filters in FASTA
[TXT]jp_SpL238R.full_MSA.fasta.withGaps.html2015-04-17 18:31 18MFull MSA before JPred filters in FASTA
[ ]jp_SpL238R.hmm2015-04-17 18:30 35KHHMer2 profile of the alignment
[TXT]jp_SpL238R.html2015-04-17 18:30 281KHTML prediction and alignment data
[ ]jp_SpL238R.input2015-04-17 17:19 194 Raw input data for analysis
[ ]jp_SpL238R.jalview2015-04-17 18:30 4.6KJalview annotation file for alignment
[ ]jp_SpL238R.jnet2015-04-17 18:30 6.9KJnet secondary structure output
[TXT]jp_SpL238R.profile2015-04-17 18:28 30KPSIBLAST profile from alignment
[ ]jp_SpL238R.pssm2015-04-17 18:30 40KPSIBLAST PSSM for Jnet
[TXT]jp_SpL238R.results.html2016-02-15 12:18 85KJPred results page
[TXT]jp_SpL238R.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_SpL238R.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_SpL238R.seq2015-04-17 17:19 202 Sequence data file
[TXT]jp_SpL238R.simple.html2015-04-17 18:30 1.5KBrief HTML: sequence and prediction only
[TXT]jp_SpL238R.svg.html2015-04-17 18:31 77KJalview SVG summary of results
[ ]jp_SpL238R.tar.gz2015-04-17 18:31 6.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.