JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:27 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r9fa_.name2015-04-17 18:30 0 Job name flag file
[ ]jp_qqaclsI.align2015-04-17 20:27 550 PSIBLAST alignment in FASTA format
[TXT]jp_qqaclsI.als2015-04-17 20:27 2.1KAlscript command file for PS/PDF output
[ ]jp_qqaclsI.blast.gz2015-04-17 20:27 2.7KCompressed PSIBLAST output file
[TXT]jp_qqaclsI.coils.csv2015-04-17 20:27 756 COILS output in CSV format
[ ]jp_qqaclsI.coilseq.lupas_142015-04-17 20:27 5.1KCOILS output, window length 14
[ ]jp_qqaclsI.coilseq.lupas_212015-04-17 20:27 5.1KCOILS output, window length 21
[ ]jp_qqaclsI.coilseq.lupas_282015-04-17 20:27 5.1KCOILS output, window length 28
[ ]jp_qqaclsI.concise2015-04-17 20:27 6.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_qqaclsI.concise.blc2015-04-17 20:27 2.4KBLC format prediction and alignment data
[ ]jp_qqaclsI.concise.fasta2015-04-17 20:27 1.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_qqaclsI.concise.pdf2015-04-17 20:27 16KPDF prediction and alignment data
[ ]jp_qqaclsI.concise.ps2015-04-17 20:27 269KPrediction: coiled-coil, solvent, alignment
[ ]jp_qqaclsI.fasta2015-04-17 20:24 135 Input query sequence in FASTA format
[ ]jp_qqaclsI.full_MSA.fasta2015-04-17 20:27 2.0KFull MSA before JPred filters in FASTA
[TXT]jp_qqaclsI.full_MSA.fasta.noGaps.html2015-04-17 20:27 3.5KFull MSA before JPred filters in FASTA
[TXT]jp_qqaclsI.full_MSA.fasta.withGaps.html2015-04-17 20:27 4.2KFull MSA before JPred filters in FASTA
[ ]jp_qqaclsI.hmm2015-04-17 20:27 23KHHMer2 profile of the alignment
[TXT]jp_qqaclsI.html2015-04-17 20:27 13KHTML prediction and alignment data
[ ]jp_qqaclsI.input2015-04-17 18:30 128 Raw input data for analysis
[ ]jp_qqaclsI.jalview2015-04-17 20:27 3.2KJalview annotation file for alignment
[ ]jp_qqaclsI.jnet2015-04-17 20:27 4.5KJnet secondary structure output
[TXT]jp_qqaclsI.profile2015-04-17 20:25 20KPSIBLAST profile from alignment
[ ]jp_qqaclsI.pssm2015-04-17 20:27 26KPSIBLAST PSSM for Jnet
[TXT]jp_qqaclsI.results.html2016-02-15 12:18 57KJPred results page
[TXT]jp_qqaclsI.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_qqaclsI.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_qqaclsI.seq2015-04-17 18:30 135 Sequence data file
[TXT]jp_qqaclsI.simple.html2015-04-17 20:27 1.3KBrief HTML: sequence and prediction only
[TXT]jp_qqaclsI.svg.html2015-04-17 20:27 49KJalview SVG summary of results
[ ]jp_qqaclsI.tar.gz2015-04-17 20:27 45KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.