JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:29 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1s2xa_.name2015-04-17 17:56 0 Job name flag file
[ ]jp_mfs3jkj.align2015-04-17 19:29 390 PSIBLAST alignment in FASTA format
[TXT]jp_mfs3jkj.als2015-04-17 19:29 2.6KAlscript command file for PS/PDF output
[ ]jp_mfs3jkj.blast.gz2015-04-17 19:29 2.0KCompressed PSIBLAST output file
[TXT]jp_mfs3jkj.coils.csv2015-04-17 19:29 1.1KCOILS output in CSV format
[ ]jp_mfs3jkj.coilseq.lupas_142015-04-17 19:29 7.6KCOILS output, window length 14
[ ]jp_mfs3jkj.coilseq.lupas_212015-04-17 19:29 7.6KCOILS output, window length 21
[ ]jp_mfs3jkj.coilseq.lupas_282015-04-17 19:29 7.6KCOILS output, window length 28
[ ]jp_mfs3jkj.concise2015-04-17 19:29 8.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_mfs3jkj.concise.blc2015-04-17 19:29 3.1KBLC format prediction and alignment data
[ ]jp_mfs3jkj.concise.fasta2015-04-17 19:29 2.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_mfs3jkj.concise.pdf2015-04-17 19:29 21KPDF prediction and alignment data
[ ]jp_mfs3jkj.concise.ps2015-04-17 19:29 374KPrediction: coiled-coil, solvent, alignment
[ ]jp_mfs3jkj.fasta2015-04-17 19:28 195 Input query sequence in FASTA format
[ ]jp_mfs3jkj.full_MSA.fasta2015-04-17 19:29 1.0KFull MSA before JPred filters in FASTA
[TXT]jp_mfs3jkj.full_MSA.fasta.noGaps.html2015-04-17 19:29 1.5KFull MSA before JPred filters in FASTA
[TXT]jp_mfs3jkj.full_MSA.fasta.withGaps.html2015-04-17 19:29 1.6KFull MSA before JPred filters in FASTA
[ ]jp_mfs3jkj.hmm2015-04-17 19:29 34KHHMer2 profile of the alignment
[TXT]jp_mfs3jkj.html2015-04-17 19:29 20KHTML prediction and alignment data
[ ]jp_mfs3jkj.input2015-04-17 17:56 187 Raw input data for analysis
[ ]jp_mfs3jkj.jalview2015-04-17 19:29 4.5KJalview annotation file for alignment
[ ]jp_mfs3jkj.jnet2015-04-17 19:29 6.6KJnet secondary structure output
[TXT]jp_mfs3jkj.profile2015-04-17 19:28 29KPSIBLAST profile from alignment
[ ]jp_mfs3jkj.pssm2015-04-17 19:29 39KPSIBLAST PSSM for Jnet
[TXT]jp_mfs3jkj.results.html2016-02-15 12:18 81KJPred results page
[TXT]jp_mfs3jkj.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_mfs3jkj.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_mfs3jkj.seq2015-04-17 17:56 195 Sequence data file
[TXT]jp_mfs3jkj.simple.html2015-04-17 19:29 1.5KBrief HTML: sequence and prediction only
[TXT]jp_mfs3jkj.svg.html2015-04-17 19:29 73KJalview SVG summary of results
[ ]jp_mfs3jkj.tar.gz2015-04-17 19:29 55KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.