JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:32 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t07a_.name2015-04-17 16:43 0 Job name flag file
[ ]jp_tJHKS5z.align2015-04-17 17:31 25KPSIBLAST alignment in FASTA format
[TXT]jp_tJHKS5z.als2015-04-17 17:31 1.8KAlscript command file for PS/PDF output
[ ]jp_tJHKS5z.blast.gz2015-04-17 17:31 88KCompressed PSIBLAST output file
[TXT]jp_tJHKS5z.coils.csv2015-04-17 17:31 516 COILS output in CSV format
[ ]jp_tJHKS5z.coilseq.lupas_142015-04-17 17:31 3.4KCOILS output, window length 14
[ ]jp_tJHKS5z.coilseq.lupas_212015-04-17 17:31 3.4KCOILS output, window length 21
[ ]jp_tJHKS5z.coilseq.lupas_282015-04-17 17:31 3.4KCOILS output, window length 28
[ ]jp_tJHKS5z.concise2015-04-17 17:31 50KPrediction: coiled-coil, solvent, alignment
[ ]jp_tJHKS5z.concise.blc2015-04-17 17:31 26KBLC format prediction and alignment data
[ ]jp_tJHKS5z.concise.fasta2015-04-17 17:31 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_tJHKS5z.concise.pdf2015-04-17 17:31 149KPDF prediction and alignment data
[ ]jp_tJHKS5z.concise.ps2015-04-17 17:31 2.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_tJHKS5z.fasta2015-04-17 17:29 95 Input query sequence in FASTA format
[ ]jp_tJHKS5z.full_MSA.fasta2015-04-17 17:31 70KFull MSA before JPred filters in FASTA
[TXT]jp_tJHKS5z.full_MSA.fasta.noGaps.html2015-04-17 17:31 123KFull MSA before JPred filters in FASTA
[TXT]jp_tJHKS5z.full_MSA.fasta.withGaps.html2015-04-17 17:31 291KFull MSA before JPred filters in FASTA
[ ]jp_tJHKS5z.hmm2015-04-17 17:31 15KHHMer2 profile of the alignment
[TXT]jp_tJHKS5z.html2015-04-17 17:31 83KHTML prediction and alignment data
[ ]jp_tJHKS5z.input2015-04-17 16:43 88 Raw input data for analysis
[ ]jp_tJHKS5z.jalview2015-04-17 17:31 2.5KJalview annotation file for alignment
[ ]jp_tJHKS5z.jnet2015-04-17 17:31 3.0KJnet secondary structure output
[TXT]jp_tJHKS5z.profile2015-04-17 17:31 13KPSIBLAST profile from alignment
[ ]jp_tJHKS5z.pssm2015-04-17 17:31 17KPSIBLAST PSSM for Jnet
[TXT]jp_tJHKS5z.results.html2016-02-15 12:18 42KJPred results page
[TXT]jp_tJHKS5z.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_tJHKS5z.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_tJHKS5z.seq2015-04-17 16:43 95 Sequence data file
[TXT]jp_tJHKS5z.simple.html2015-04-17 17:31 1.1KBrief HTML: sequence and prediction only
[TXT]jp_tJHKS5z.svg.html2015-04-17 17:31 34KJalview SVG summary of results
[ ]jp_tJHKS5z.tar.gz2015-04-17 17:32 336KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.