JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:23 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t3ua_.name2015-04-17 17:21 0 Job name flag file
[ ]jp_amL44IO.align2015-04-17 19:22 131KPSIBLAST alignment in FASTA format
[TXT]jp_amL44IO.als2015-04-17 19:22 1.8KAlscript command file for PS/PDF output
[ ]jp_amL44IO.blast.gz2015-04-17 19:20 415KCompressed PSIBLAST output file
[TXT]jp_amL44IO.coils.csv2015-04-17 19:22 582 COILS output in CSV format
[ ]jp_amL44IO.coilseq.lupas_142015-04-17 19:22 3.9KCOILS output, window length 14
[ ]jp_amL44IO.coilseq.lupas_212015-04-17 19:22 3.9KCOILS output, window length 21
[ ]jp_amL44IO.coilseq.lupas_282015-04-17 19:22 3.9KCOILS output, window length 28
[ ]jp_amL44IO.concise2015-04-17 19:22 250KPrediction: coiled-coil, solvent, alignment
[ ]jp_amL44IO.concise.blc2015-04-17 19:22 130KBLC format prediction and alignment data
[ ]jp_amL44IO.concise.fasta2015-04-17 19:22 132KPrediction: coiled-coil, solvent, alignment
[ ]jp_amL44IO.concise.pdf2015-04-17 19:23 825KPDF prediction and alignment data
[ ]jp_amL44IO.concise.ps2015-04-17 19:22 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_amL44IO.fasta2015-04-17 18:26 106 Input query sequence in FASTA format
[ ]jp_amL44IO.full_MSA.fasta2015-04-17 19:21 838KFull MSA before JPred filters in FASTA
[TXT]jp_amL44IO.full_MSA.fasta.noGaps.html2015-04-17 19:23 383KFull MSA before JPred filters in FASTA
[TXT]jp_amL44IO.full_MSA.fasta.withGaps.html2015-04-17 19:23 3.0MFull MSA before JPred filters in FASTA
[ ]jp_amL44IO.hmm2015-04-17 19:22 17KHHMer2 profile of the alignment
[TXT]jp_amL44IO.html2015-04-17 19:22 372KHTML prediction and alignment data
[ ]jp_amL44IO.input2015-04-17 17:21 99 Raw input data for analysis
[ ]jp_amL44IO.jalview2015-04-17 19:22 2.7KJalview annotation file for alignment
[ ]jp_amL44IO.jnet2015-04-17 19:22 3.4KJnet secondary structure output
[TXT]jp_amL44IO.profile2015-04-17 19:18 15KPSIBLAST profile from alignment
[ ]jp_amL44IO.pssm2015-04-17 19:22 20KPSIBLAST PSSM for Jnet
[TXT]jp_amL44IO.results.html2016-02-15 12:18 46KJPred results page
[TXT]jp_amL44IO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_amL44IO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_amL44IO.seq2015-04-17 17:21 106 Sequence data file
[TXT]jp_amL44IO.simple.html2015-04-17 19:22 1.1KBrief HTML: sequence and prediction only
[TXT]jp_amL44IO.svg.html2015-04-17 19:23 38KJalview SVG summary of results
[ ]jp_amL44IO.tar.gz2015-04-17 19:23 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.