JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:29 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ti6b1.name2015-04-17 17:21 0 Job name flag file
[ ]jp_pOXPmpY.align2015-04-17 18:29 102KPSIBLAST alignment in FASTA format
[TXT]jp_pOXPmpY.als2015-04-17 18:29 2.3KAlscript command file for PS/PDF output
[ ]jp_pOXPmpY.blast.gz2015-04-17 18:28 185KCompressed PSIBLAST output file
[TXT]jp_pOXPmpY.coils.csv2015-04-17 18:29 504 COILS output in CSV format
[ ]jp_pOXPmpY.coilseq.lupas_142015-04-17 18:29 3.3KCOILS output, window length 14
[ ]jp_pOXPmpY.coilseq.lupas_212015-04-17 18:29 3.3KCOILS output, window length 21
[ ]jp_pOXPmpY.coilseq.lupas_282015-04-17 18:29 3.3KCOILS output, window length 28
[ ]jp_pOXPmpY.concise2015-04-17 18:29 193KPrediction: coiled-coil, solvent, alignment
[ ]jp_pOXPmpY.concise.blc2015-04-17 18:29 101KBLC format prediction and alignment data
[ ]jp_pOXPmpY.concise.fasta2015-04-17 18:29 103KPrediction: coiled-coil, solvent, alignment
[ ]jp_pOXPmpY.concise.pdf2015-04-17 18:29 598KPDF prediction and alignment data
[ ]jp_pOXPmpY.concise.ps2015-04-17 18:29 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_pOXPmpY.fasta2015-04-17 18:26 93 Input query sequence in FASTA format
[ ]jp_pOXPmpY.full_MSA.fasta2015-04-17 18:29 626KFull MSA before JPred filters in FASTA
[TXT]jp_pOXPmpY.full_MSA.fasta.noGaps.html2015-04-17 18:29 282KFull MSA before JPred filters in FASTA
[TXT]jp_pOXPmpY.full_MSA.fasta.withGaps.html2015-04-17 18:29 2.9MFull MSA before JPred filters in FASTA
[ ]jp_pOXPmpY.hmm2015-04-17 18:29 15KHHMer2 profile of the alignment
[TXT]jp_pOXPmpY.html2015-04-17 18:29 311KHTML prediction and alignment data
[ ]jp_pOXPmpY.input2015-04-17 17:21 86 Raw input data for analysis
[ ]jp_pOXPmpY.jalview2015-04-17 18:29 2.4KJalview annotation file for alignment
[ ]jp_pOXPmpY.jnet2015-04-17 18:29 3.0KJnet secondary structure output
[TXT]jp_pOXPmpY.profile2015-04-17 18:28 13KPSIBLAST profile from alignment
[ ]jp_pOXPmpY.pssm2015-04-17 18:29 17KPSIBLAST PSSM for Jnet
[TXT]jp_pOXPmpY.results.html2016-02-15 12:18 42KJPred results page
[TXT]jp_pOXPmpY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_pOXPmpY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_pOXPmpY.seq2015-04-17 17:21 93 Sequence data file
[TXT]jp_pOXPmpY.simple.html2015-04-17 18:29 1.2KBrief HTML: sequence and prediction only
[TXT]jp_pOXPmpY.svg.html2015-04-17 18:29 34KJalview SVG summary of results
[ ]jp_pOXPmpY.tar.gz2015-04-17 18:29 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.