JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_C3EmotV.input2015-04-17 17:21 242 Raw input data for analysis
[ ]jp_C3EmotV.seq2015-04-17 17:21 251 Sequence data file
[TXT]d1tl2a_.name2015-04-17 17:21 0 Job name flag file
[ ]jp_C3EmotV.fasta2015-04-17 18:27 251 Input query sequence in FASTA format
[TXT]jp_C3EmotV.profile2015-04-17 18:29 38KPSIBLAST profile from alignment
[ ]jp_C3EmotV.blast.gz2015-04-17 18:30 620KCompressed PSIBLAST output file
[ ]jp_C3EmotV.full_MSA.fasta2015-04-17 18:30 2.5MFull MSA before JPred filters in FASTA
[ ]jp_C3EmotV.align2015-04-17 18:30 266KPSIBLAST alignment in FASTA format
[ ]jp_C3EmotV.pssm2015-04-17 18:30 50KPSIBLAST PSSM for Jnet
[ ]jp_C3EmotV.hmm2015-04-17 18:30 44KHHMer2 profile of the alignment
[ ]jp_C3EmotV.jnet2015-04-17 18:30 8.6KJnet secondary structure output
[ ]jp_C3EmotV.coilseq.lupas_212015-04-17 18:30 9.9KCOILS output, window length 21
[ ]jp_C3EmotV.coilseq.lupas_142015-04-17 18:30 9.9KCOILS output, window length 14
[ ]jp_C3EmotV.coilseq.lupas_282015-04-17 18:30 9.9KCOILS output, window length 28
[TXT]jp_C3EmotV.coils.csv2015-04-17 18:30 1.4KCOILS output in CSV format
[ ]jp_C3EmotV.concise2015-04-17 18:30 522KPrediction: coiled-coil, solvent, alignment
[TXT]jp_C3EmotV.html2015-04-17 18:30 483KHTML prediction and alignment data
[TXT]jp_C3EmotV.simple.html2015-04-17 18:30 1.9KBrief HTML: sequence and prediction only
[ ]jp_C3EmotV.jalview2015-04-17 18:30 5.4KJalview annotation file for alignment
[ ]jp_C3EmotV.concise.fasta2015-04-17 18:30 270KPrediction: coiled-coil, solvent, alignment
[ ]jp_C3EmotV.concise.blc2015-04-17 18:30 265KBLC format prediction and alignment data
[TXT]jp_C3EmotV.als2015-04-17 18:30 4.6KAlscript command file for PS/PDF output
[ ]jp_C3EmotV.concise.ps2015-04-17 18:30 30MPrediction: coiled-coil, solvent, alignment
[ ]jp_C3EmotV.concise.pdf2015-04-17 18:31 1.4MPDF prediction and alignment data
[TXT]jp_C3EmotV.full_MSA.fasta.withGaps.html2015-04-17 18:31 8.7MFull MSA before JPred filters in FASTA
[TXT]jp_C3EmotV.full_MSA.fasta.noGaps.html2015-04-17 18:31 414KFull MSA before JPred filters in FASTA
[TXT]jp_C3EmotV.svg.html2015-04-17 18:31 95KJalview SVG summary of results
[TXT]LOG2015-04-17 18:31 4.7KJPred server log file
[ ]jp_C3EmotV.tar.gz2015-04-17 18:31 2.8MArchive containing complete results
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]jp_C3EmotV.results.html2016-02-15 12:18 103KJPred results page
[TXT]jp_C3EmotV.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_C3EmotV.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.