JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:31 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1twfj_.name2015-04-17 18:33 0 Job name flag file
[ ]jp_ouTjPDL.align2015-04-17 20:31 16KPSIBLAST alignment in FASTA format
[TXT]jp_ouTjPDL.als2015-04-17 20:31 2.1KAlscript command file for PS/PDF output
[ ]jp_ouTjPDL.blast.gz2015-04-17 20:31 98KCompressed PSIBLAST output file
[TXT]jp_ouTjPDL.coils.csv2015-04-17 20:31 420 COILS output in CSV format
[ ]jp_ouTjPDL.coilseq.lupas_142015-04-17 20:31 2.7KCOILS output, window length 14
[ ]jp_ouTjPDL.coilseq.lupas_212015-04-17 20:31 2.7KCOILS output, window length 21
[ ]jp_ouTjPDL.coilseq.lupas_282015-04-17 20:31 2.7KCOILS output, window length 28
[ ]jp_ouTjPDL.concise2015-04-17 20:31 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_ouTjPDL.concise.blc2015-04-17 20:31 17KBLC format prediction and alignment data
[ ]jp_ouTjPDL.concise.fasta2015-04-17 20:31 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_ouTjPDL.concise.pdf2015-04-17 20:31 100KPDF prediction and alignment data
[ ]jp_ouTjPDL.concise.ps2015-04-17 20:31 1.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_ouTjPDL.fasta2015-04-17 20:29 78 Input query sequence in FASTA format
[ ]jp_ouTjPDL.full_MSA.fasta2015-04-17 20:31 118KFull MSA before JPred filters in FASTA
[TXT]jp_ouTjPDL.full_MSA.fasta.noGaps.html2015-04-17 20:31 88KFull MSA before JPred filters in FASTA
[TXT]jp_ouTjPDL.full_MSA.fasta.withGaps.html2015-04-17 20:31 432KFull MSA before JPred filters in FASTA
[ ]jp_ouTjPDL.hmm2015-04-17 20:31 12KHHMer2 profile of the alignment
[TXT]jp_ouTjPDL.html2015-04-17 20:31 61KHTML prediction and alignment data
[ ]jp_ouTjPDL.input2015-04-17 18:33 72 Raw input data for analysis
[ ]jp_ouTjPDL.jalview2015-04-17 20:31 2.1KJalview annotation file for alignment
[ ]jp_ouTjPDL.jnet2015-04-17 20:31 2.5KJnet secondary structure output
[TXT]jp_ouTjPDL.profile2015-04-17 20:30 11KPSIBLAST profile from alignment
[ ]jp_ouTjPDL.pssm2015-04-17 20:31 14KPSIBLAST PSSM for Jnet
[TXT]jp_ouTjPDL.results.html2016-02-15 12:18 38KJPred results page
[TXT]jp_ouTjPDL.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ouTjPDL.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ouTjPDL.seq2015-04-17 18:33 78 Sequence data file
[TXT]jp_ouTjPDL.simple.html2015-04-17 20:31 1.1KBrief HTML: sequence and prediction only
[TXT]jp_ouTjPDL.svg.html2015-04-17 20:31 30KJalview SVG summary of results
[ ]jp_ouTjPDL.tar.gz2015-04-17 20:31 285KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.