JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1u07a_.name2015-04-17 17:57 0 Job name flag file
[ ]jp_iA3qAjL.align2015-04-17 19:35 106KPSIBLAST alignment in FASTA format
[TXT]jp_iA3qAjL.als2015-04-17 19:35 2.2KAlscript command file for PS/PDF output
[ ]jp_iA3qAjL.blast.gz2015-04-17 19:35 2.3MCompressed PSIBLAST output file
[TXT]jp_iA3qAjL.coils.csv2015-04-17 19:35 570 COILS output in CSV format
[ ]jp_iA3qAjL.coilseq.lupas_142015-04-17 19:35 3.8KCOILS output, window length 14
[ ]jp_iA3qAjL.coilseq.lupas_212015-04-17 19:35 3.8KCOILS output, window length 21
[ ]jp_iA3qAjL.coilseq.lupas_282015-04-17 19:35 3.8KCOILS output, window length 28
[ ]jp_iA3qAjL.concise2015-04-17 19:35 202KPrediction: coiled-coil, solvent, alignment
[ ]jp_iA3qAjL.concise.blc2015-04-17 19:35 105KBLC format prediction and alignment data
[ ]jp_iA3qAjL.concise.fasta2015-04-17 19:35 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_iA3qAjL.concise.pdf2015-04-17 19:36 657KPDF prediction and alignment data
[ ]jp_iA3qAjL.concise.ps2015-04-17 19:35 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_iA3qAjL.fasta2015-04-17 19:30 104 Input query sequence in FASTA format
[ ]jp_iA3qAjL.full_MSA.fasta2015-04-17 19:35 5.2MFull MSA before JPred filters in FASTA
[TXT]jp_iA3qAjL.full_MSA.fasta.noGaps.html2015-04-17 19:36 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_iA3qAjL.full_MSA.fasta.withGaps.html2015-04-17 19:36 18MFull MSA before JPred filters in FASTA
[ ]jp_iA3qAjL.hmm2015-04-17 19:35 17KHHMer2 profile of the alignment
[TXT]jp_iA3qAjL.html2015-04-17 19:35 302KHTML prediction and alignment data
[ ]jp_iA3qAjL.input2015-04-17 17:57 97 Raw input data for analysis
[ ]jp_iA3qAjL.jalview2015-04-17 19:35 2.6KJalview annotation file for alignment
[ ]jp_iA3qAjL.jnet2015-04-17 19:35 3.4KJnet secondary structure output
[TXT]jp_iA3qAjL.profile2015-04-17 19:33 15KPSIBLAST profile from alignment
[ ]jp_iA3qAjL.pssm2015-04-17 19:35 19KPSIBLAST PSSM for Jnet
[TXT]jp_iA3qAjL.results.html2016-02-15 12:18 46KJPred results page
[TXT]jp_iA3qAjL.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_iA3qAjL.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_iA3qAjL.seq2015-04-17 17:57 104 Sequence data file
[TXT]jp_iA3qAjL.simple.html2015-04-17 19:35 1.2KBrief HTML: sequence and prediction only
[TXT]jp_iA3qAjL.svg.html2015-04-17 19:36 38KJalview SVG summary of results
[ ]jp_iA3qAjL.tar.gz2015-04-17 19:36 5.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.