JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:25 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1u2ca2.name2015-04-17 17:58 0 Job name flag file
[ ]jp_BhrKl_L.align2015-04-17 20:25 7.2KPSIBLAST alignment in FASTA format
[TXT]jp_BhrKl_L.als2015-04-17 20:25 2.3KAlscript command file for PS/PDF output
[ ]jp_BhrKl_L.blast.gz2015-04-17 20:25 30KCompressed PSIBLAST output file
[TXT]jp_BhrKl_L.coils.csv2015-04-17 20:25 780 COILS output in CSV format
[ ]jp_BhrKl_L.coilseq.lupas_142015-04-17 20:25 5.2KCOILS output, window length 14
[ ]jp_BhrKl_L.coilseq.lupas_212015-04-17 20:25 5.2KCOILS output, window length 21
[ ]jp_BhrKl_L.coilseq.lupas_282015-04-17 20:25 5.2KCOILS output, window length 28
[ ]jp_BhrKl_L.concise2015-04-17 20:25 19KPrediction: coiled-coil, solvent, alignment
[ ]jp_BhrKl_L.concise.blc2015-04-17 20:25 9.0KBLC format prediction and alignment data
[ ]jp_BhrKl_L.concise.fasta2015-04-17 20:25 8.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_BhrKl_L.concise.pdf2015-04-17 20:25 62KPDF prediction and alignment data
[ ]jp_BhrKl_L.concise.ps2015-04-17 20:25 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_BhrKl_L.fasta2015-04-17 19:30 139 Input query sequence in FASTA format
[ ]jp_BhrKl_L.full_MSA.fasta2015-04-17 20:25 30KFull MSA before JPred filters in FASTA
[TXT]jp_BhrKl_L.full_MSA.fasta.noGaps.html2015-04-17 20:25 31KFull MSA before JPred filters in FASTA
[TXT]jp_BhrKl_L.full_MSA.fasta.withGaps.html2015-04-17 20:25 151KFull MSA before JPred filters in FASTA
[ ]jp_BhrKl_L.hmm2015-04-17 20:25 23KHHMer2 profile of the alignment
[TXT]jp_BhrKl_L.html2015-04-17 20:25 29KHTML prediction and alignment data
[ ]jp_BhrKl_L.input2015-04-17 17:58 132 Raw input data for analysis
[ ]jp_BhrKl_L.jalview2015-04-17 20:25 3.3KJalview annotation file for alignment
[ ]jp_BhrKl_L.jnet2015-04-17 20:25 4.6KJnet secondary structure output
[TXT]jp_BhrKl_L.profile2015-04-17 20:10 20KPSIBLAST profile from alignment
[ ]jp_BhrKl_L.pssm2015-04-17 20:25 27KPSIBLAST PSSM for Jnet
[TXT]jp_BhrKl_L.results.html2016-02-15 12:18 59KJPred results page
[TXT]jp_BhrKl_L.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_BhrKl_L.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_BhrKl_L.seq2015-04-17 17:58 139 Sequence data file
[TXT]jp_BhrKl_L.simple.html2015-04-17 20:25 1.3KBrief HTML: sequence and prediction only
[TXT]jp_BhrKl_L.svg.html2015-04-17 20:25 51KJalview SVG summary of results
[ ]jp_BhrKl_L.tar.gz2015-04-17 20:25 156KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.