JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1uuja_.name2015-04-17 16:08 0 Job name flag file
[ ]jp_uc1myiG.align2015-04-17 16:35 16KPSIBLAST alignment in FASTA format
[TXT]jp_uc1myiG.als2015-04-17 16:35 1.6KAlscript command file for PS/PDF output
[ ]jp_uc1myiG.blast.gz2015-04-17 16:35 53KCompressed PSIBLAST output file
[TXT]jp_uc1myiG.coils.csv2015-04-17 16:35 486 COILS output in CSV format
[ ]jp_uc1myiG.coilseq.lupas_142015-04-17 16:35 3.2KCOILS output, window length 14
[ ]jp_uc1myiG.coilseq.lupas_212015-04-17 16:35 3.2KCOILS output, window length 21
[ ]jp_uc1myiG.coilseq.lupas_282015-04-17 16:35 3.2KCOILS output, window length 28
[ ]jp_uc1myiG.concise2015-04-17 16:35 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_uc1myiG.concise.blc2015-04-17 16:35 17KBLC format prediction and alignment data
[ ]jp_uc1myiG.concise.fasta2015-04-17 16:35 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_uc1myiG.concise.pdf2015-04-17 16:35 89KPDF prediction and alignment data
[ ]jp_uc1myiG.concise.ps2015-04-17 16:35 1.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_uc1myiG.fasta2015-04-17 16:34 90 Input query sequence in FASTA format
[ ]jp_uc1myiG.full_MSA.fasta2015-04-17 16:35 82KFull MSA before JPred filters in FASTA
[TXT]jp_uc1myiG.full_MSA.fasta.noGaps.html2015-04-17 16:35 52KFull MSA before JPred filters in FASTA
[TXT]jp_uc1myiG.full_MSA.fasta.withGaps.html2015-04-17 16:35 294KFull MSA before JPred filters in FASTA
[ ]jp_uc1myiG.hmm2015-04-17 16:35 14KHHMer2 profile of the alignment
[TXT]jp_uc1myiG.html2015-04-17 16:35 57KHTML prediction and alignment data
[ ]jp_uc1myiG.input2015-04-17 16:08 83 Raw input data for analysis
[ ]jp_uc1myiG.jalview2015-04-17 16:35 2.4KJalview annotation file for alignment
[ ]jp_uc1myiG.jnet2015-04-17 16:35 2.9KJnet secondary structure output
[TXT]jp_uc1myiG.profile2015-04-17 16:35 13KPSIBLAST profile from alignment
[ ]jp_uc1myiG.pssm2015-04-17 16:35 16KPSIBLAST PSSM for Jnet
[TXT]jp_uc1myiG.results.html2016-02-15 12:18 40KJPred results page
[TXT]jp_uc1myiG.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_uc1myiG.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_uc1myiG.seq2015-04-17 16:08 90 Sequence data file
[TXT]jp_uc1myiG.simple.html2015-04-17 16:35 1.1KBrief HTML: sequence and prediction only
[TXT]jp_uc1myiG.svg.html2015-04-17 16:36 32KJalview SVG summary of results
[ ]jp_uc1myiG.tar.gz2015-04-17 16:36 210KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.