JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:33 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1uv7a_.name2015-04-17 16:45 0 Job name flag file
[ ]jp_MmF4922.align2015-04-17 17:33 23KPSIBLAST alignment in FASTA format
[TXT]jp_MmF4922.als2015-04-17 17:33 2.1KAlscript command file for PS/PDF output
[ ]jp_MmF4922.blast.gz2015-04-17 17:33 55KCompressed PSIBLAST output file
[TXT]jp_MmF4922.coils.csv2015-04-17 17:33 486 COILS output in CSV format
[ ]jp_MmF4922.coilseq.lupas_142015-04-17 17:33 3.2KCOILS output, window length 14
[ ]jp_MmF4922.coilseq.lupas_212015-04-17 17:33 3.2KCOILS output, window length 21
[ ]jp_MmF4922.coilseq.lupas_282015-04-17 17:33 3.2KCOILS output, window length 28
[ ]jp_MmF4922.concise2015-04-17 17:33 45KPrediction: coiled-coil, solvent, alignment
[ ]jp_MmF4922.concise.blc2015-04-17 17:33 23KBLC format prediction and alignment data
[ ]jp_MmF4922.concise.fasta2015-04-17 17:33 24KPrediction: coiled-coil, solvent, alignment
[ ]jp_MmF4922.concise.pdf2015-04-17 17:33 148KPDF prediction and alignment data
[ ]jp_MmF4922.concise.ps2015-04-17 17:33 2.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_MmF4922.fasta2015-04-17 17:31 90 Input query sequence in FASTA format
[ ]jp_MmF4922.full_MSA.fasta2015-04-17 17:33 55KFull MSA before JPred filters in FASTA
[TXT]jp_MmF4922.full_MSA.fasta.noGaps.html2015-04-17 17:33 69KFull MSA before JPred filters in FASTA
[TXT]jp_MmF4922.full_MSA.fasta.withGaps.html2015-04-17 17:33 327KFull MSA before JPred filters in FASTA
[ ]jp_MmF4922.hmm2015-04-17 17:33 14KHHMer2 profile of the alignment
[TXT]jp_MmF4922.html2015-04-17 17:33 78KHTML prediction and alignment data
[ ]jp_MmF4922.input2015-04-17 16:45 83 Raw input data for analysis
[ ]jp_MmF4922.jalview2015-04-17 17:33 2.4KJalview annotation file for alignment
[ ]jp_MmF4922.jnet2015-04-17 17:33 2.9KJnet secondary structure output
[TXT]jp_MmF4922.profile2015-04-17 17:32 13KPSIBLAST profile from alignment
[ ]jp_MmF4922.pssm2015-04-17 17:33 16KPSIBLAST PSSM for Jnet
[TXT]jp_MmF4922.results.html2016-02-15 12:18 41KJPred results page
[TXT]jp_MmF4922.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_MmF4922.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_MmF4922.seq2015-04-17 16:45 90 Sequence data file
[TXT]jp_MmF4922.simple.html2015-04-17 17:33 1.2KBrief HTML: sequence and prediction only
[TXT]jp_MmF4922.svg.html2015-04-17 17:33 33KJalview SVG summary of results
[ ]jp_MmF4922.tar.gz2015-04-17 17:33 299KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.