JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:37 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1uz5a1.name2015-04-17 17:59 0 Job name flag file
[ ]jp_dOhcdyR.align2015-04-17 19:36 77KPSIBLAST alignment in FASTA format
[TXT]jp_dOhcdyR.als2015-04-17 19:36 2.1KAlscript command file for PS/PDF output
[ ]jp_dOhcdyR.blast.gz2015-04-17 19:36 355KCompressed PSIBLAST output file
[TXT]jp_dOhcdyR.coils.csv2015-04-17 19:36 462 COILS output in CSV format
[ ]jp_dOhcdyR.coilseq.lupas_142015-04-17 19:36 3.0KCOILS output, window length 14
[ ]jp_dOhcdyR.coilseq.lupas_212015-04-17 19:36 3.0KCOILS output, window length 21
[ ]jp_dOhcdyR.coilseq.lupas_282015-04-17 19:36 3.0KCOILS output, window length 28
[ ]jp_dOhcdyR.concise2015-04-17 19:36 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_dOhcdyR.concise.blc2015-04-17 19:36 77KBLC format prediction and alignment data
[ ]jp_dOhcdyR.concise.fasta2015-04-17 19:36 79KPrediction: coiled-coil, solvent, alignment
[ ]jp_dOhcdyR.concise.pdf2015-04-17 19:36 480KPDF prediction and alignment data
[ ]jp_dOhcdyR.concise.ps2015-04-17 19:36 8.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_dOhcdyR.fasta2015-04-17 19:32 86 Input query sequence in FASTA format
[ ]jp_dOhcdyR.full_MSA.fasta2015-04-17 19:36 934KFull MSA before JPred filters in FASTA
[TXT]jp_dOhcdyR.full_MSA.fasta.noGaps.html2015-04-17 19:36 439KFull MSA before JPred filters in FASTA
[TXT]jp_dOhcdyR.full_MSA.fasta.withGaps.html2015-04-17 19:36 3.4MFull MSA before JPred filters in FASTA
[ ]jp_dOhcdyR.hmm2015-04-17 19:36 14KHHMer2 profile of the alignment
[TXT]jp_dOhcdyR.html2015-04-17 19:36 251KHTML prediction and alignment data
[ ]jp_dOhcdyR.input2015-04-17 17:59 79 Raw input data for analysis
[ ]jp_dOhcdyR.jalview2015-04-17 19:36 2.2KJalview annotation file for alignment
[ ]jp_dOhcdyR.jnet2015-04-17 19:36 2.7KJnet secondary structure output
[TXT]jp_dOhcdyR.profile2015-04-17 19:35 12KPSIBLAST profile from alignment
[ ]jp_dOhcdyR.pssm2015-04-17 19:36 15KPSIBLAST PSSM for Jnet
[TXT]jp_dOhcdyR.results.html2016-02-15 12:18 39KJPred results page
[TXT]jp_dOhcdyR.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_dOhcdyR.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_dOhcdyR.seq2015-04-17 17:59 86 Sequence data file
[TXT]jp_dOhcdyR.simple.html2015-04-17 19:36 1.1KBrief HTML: sequence and prediction only
[TXT]jp_dOhcdyR.svg.html2015-04-17 19:37 31KJalview SVG summary of results
[ ]jp_dOhcdyR.tar.gz2015-04-17 19:37 1.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.