JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1v58a2.name2015-04-17 17:59 0 Job name flag file
[ ]jp_NOt4NHS.align2015-04-17 19:38 8.6KPSIBLAST alignment in FASTA format
[TXT]jp_NOt4NHS.als2015-04-17 19:38 1.9KAlscript command file for PS/PDF output
[ ]jp_NOt4NHS.blast.gz2015-04-17 19:38 28KCompressed PSIBLAST output file
[TXT]jp_NOt4NHS.coils.csv2015-04-17 19:38 390 COILS output in CSV format
[ ]jp_NOt4NHS.coilseq.lupas_142015-04-17 19:38 2.5KCOILS output, window length 14
[ ]jp_NOt4NHS.coilseq.lupas_212015-04-17 19:38 2.5KCOILS output, window length 21
[ ]jp_NOt4NHS.coilseq.lupas_282015-04-17 19:38 2.5KCOILS output, window length 28
[ ]jp_NOt4NHS.concise2015-04-17 19:38 18KPrediction: coiled-coil, solvent, alignment
[ ]jp_NOt4NHS.concise.blc2015-04-17 19:38 9.4KBLC format prediction and alignment data
[ ]jp_NOt4NHS.concise.fasta2015-04-17 19:38 9.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_NOt4NHS.concise.pdf2015-04-17 19:38 57KPDF prediction and alignment data
[ ]jp_NOt4NHS.concise.ps2015-04-17 19:38 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_NOt4NHS.fasta2015-04-17 19:32 73 Input query sequence in FASTA format
[ ]jp_NOt4NHS.full_MSA.fasta2015-04-17 19:38 20KFull MSA before JPred filters in FASTA
[TXT]jp_NOt4NHS.full_MSA.fasta.noGaps.html2015-04-17 19:38 41KFull MSA before JPred filters in FASTA
[TXT]jp_NOt4NHS.full_MSA.fasta.withGaps.html2015-04-17 19:38 106KFull MSA before JPred filters in FASTA
[ ]jp_NOt4NHS.hmm2015-04-17 19:38 11KHHMer2 profile of the alignment
[TXT]jp_NOt4NHS.html2015-04-17 19:38 37KHTML prediction and alignment data
[ ]jp_NOt4NHS.input2015-04-17 17:59 67 Raw input data for analysis
[ ]jp_NOt4NHS.jalview2015-04-17 19:38 2.0KJalview annotation file for alignment
[ ]jp_NOt4NHS.jnet2015-04-17 19:38 2.3KJnet secondary structure output
[TXT]jp_NOt4NHS.profile2015-04-17 19:36 10KPSIBLAST profile from alignment
[ ]jp_NOt4NHS.pssm2015-04-17 19:38 13KPSIBLAST PSSM for Jnet
[TXT]jp_NOt4NHS.results.html2016-02-15 12:18 35KJPred results page
[TXT]jp_NOt4NHS.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_NOt4NHS.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_NOt4NHS.seq2015-04-17 17:59 73 Sequence data file
[TXT]jp_NOt4NHS.simple.html2015-04-17 19:38 1.1KBrief HTML: sequence and prediction only
[TXT]jp_NOt4NHS.svg.html2015-04-17 19:38 27KJalview SVG summary of results
[ ]jp_NOt4NHS.tar.gz2015-04-17 19:38 134KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.