JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vf6a_.name2015-04-17 15:31 0 Job name flag file
[ ]jp_5fNg_Kw.align2015-04-17 15:38 3.0KPSIBLAST alignment in FASTA format
[TXT]jp_5fNg_Kw.als2015-04-17 15:38 1.6KAlscript command file for PS/PDF output
[ ]jp_5fNg_Kw.blast.gz2015-04-17 15:38 22KCompressed PSIBLAST output file
[TXT]jp_5fNg_Kw.coils.csv2015-04-17 15:38 378 COILS output in CSV format
[ ]jp_5fNg_Kw.coilseq.lupas_142015-04-17 15:38 2.4KCOILS output, window length 14
[ ]jp_5fNg_Kw.coilseq.lupas_212015-04-17 15:38 2.4KCOILS output, window length 21
[ ]jp_5fNg_Kw.coilseq.lupas_282015-04-17 15:38 2.4KCOILS output, window length 28
[ ]jp_5fNg_Kw.concise2015-04-17 15:38 8.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_5fNg_Kw.concise.blc2015-04-17 15:38 3.9KBLC format prediction and alignment data
[ ]jp_5fNg_Kw.concise.fasta2015-04-17 15:38 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_5fNg_Kw.concise.pdf2015-04-17 15:38 26KPDF prediction and alignment data
[ ]jp_5fNg_Kw.concise.ps2015-04-17 15:38 424KPrediction: coiled-coil, solvent, alignment
[ ]jp_5fNg_Kw.fasta2015-04-17 15:36 71 Input query sequence in FASTA format
[ ]jp_5fNg_Kw.full_MSA.fasta2015-04-17 15:38 24KFull MSA before JPred filters in FASTA
[TXT]jp_5fNg_Kw.full_MSA.fasta.noGaps.html2015-04-17 15:38 57KFull MSA before JPred filters in FASTA
[TXT]jp_5fNg_Kw.full_MSA.fasta.withGaps.html2015-04-17 15:38 73KFull MSA before JPred filters in FASTA
[ ]jp_5fNg_Kw.hmm2015-04-17 15:38 11KHHMer2 profile of the alignment
[TXT]jp_5fNg_Kw.html2015-04-17 15:38 19KHTML prediction and alignment data
[ ]jp_5fNg_Kw.input2015-04-17 15:31 65 Raw input data for analysis
[ ]jp_5fNg_Kw.jalview2015-04-17 15:38 2.0KJalview annotation file for alignment
[ ]jp_5fNg_Kw.jnet2015-04-17 15:38 2.2KJnet secondary structure output
[TXT]jp_5fNg_Kw.profile2015-04-17 15:37 9.7KPSIBLAST profile from alignment
[ ]jp_5fNg_Kw.pssm2015-04-17 15:38 12KPSIBLAST PSSM for Jnet
[TXT]jp_5fNg_Kw.results.html2016-02-15 12:18 34KJPred results page
[TXT]jp_5fNg_Kw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_5fNg_Kw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_5fNg_Kw.seq2015-04-17 15:31 71 Sequence data file
[TXT]jp_5fNg_Kw.simple.html2015-04-17 15:38 1.0KBrief HTML: sequence and prediction only
[TXT]jp_5fNg_Kw.svg.html2015-04-17 15:38 26KJalview SVG summary of results
[ ]jp_5fNg_Kw.tar.gz2015-04-17 15:38 86KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.