JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vkfa_.name2015-04-17 16:09 0 Job name flag file
[ ]jp_9W7escQ.align2015-04-17 16:38 86KPSIBLAST alignment in FASTA format
[TXT]jp_9W7escQ.als2015-04-17 16:38 3.4KAlscript command file for PS/PDF output
[ ]jp_9W7escQ.blast.gz2015-04-17 16:38 267KCompressed PSIBLAST output file
[TXT]jp_9W7escQ.coils.csv2015-04-17 16:38 1.0KCOILS output in CSV format
[ ]jp_9W7escQ.coilseq.lupas_142015-04-17 16:38 7.2KCOILS output, window length 14
[ ]jp_9W7escQ.coilseq.lupas_212015-04-17 16:38 7.2KCOILS output, window length 21
[ ]jp_9W7escQ.coilseq.lupas_282015-04-17 16:38 7.2KCOILS output, window length 28
[ ]jp_9W7escQ.concise2015-04-17 16:38 173KPrediction: coiled-coil, solvent, alignment
[ ]jp_9W7escQ.concise.blc2015-04-17 16:38 88KBLC format prediction and alignment data
[ ]jp_9W7escQ.concise.fasta2015-04-17 16:38 88KPrediction: coiled-coil, solvent, alignment
[ ]jp_9W7escQ.concise.pdf2015-04-17 16:38 637KPDF prediction and alignment data
[ ]jp_9W7escQ.concise.ps2015-04-17 16:38 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_9W7escQ.fasta2015-04-17 16:35 187 Input query sequence in FASTA format
[ ]jp_9W7escQ.full_MSA.fasta2015-04-17 16:38 222KFull MSA before JPred filters in FASTA
[TXT]jp_9W7escQ.full_MSA.fasta.noGaps.html2015-04-17 16:38 177KFull MSA before JPred filters in FASTA
[TXT]jp_9W7escQ.full_MSA.fasta.withGaps.html2015-04-17 16:38 1.4MFull MSA before JPred filters in FASTA
[ ]jp_9W7escQ.hmm2015-04-17 16:38 32KHHMer2 profile of the alignment
[TXT]jp_9W7escQ.html2015-04-17 16:38 193KHTML prediction and alignment data
[ ]jp_9W7escQ.input2015-04-17 16:09 179 Raw input data for analysis
[ ]jp_9W7escQ.jalview2015-04-17 16:38 4.3KJalview annotation file for alignment
[ ]jp_9W7escQ.jnet2015-04-17 16:38 6.3KJnet secondary structure output
[TXT]jp_9W7escQ.profile2015-04-17 16:37 28KPSIBLAST profile from alignment
[ ]jp_9W7escQ.pssm2015-04-17 16:38 37KPSIBLAST PSSM for Jnet
[TXT]jp_9W7escQ.results.html2016-02-15 12:18 80KJPred results page
[TXT]jp_9W7escQ.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_9W7escQ.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_9W7escQ.seq2015-04-17 16:09 187 Sequence data file
[TXT]jp_9W7escQ.simple.html2015-04-17 16:38 1.6KBrief HTML: sequence and prediction only
[TXT]jp_9W7escQ.svg.html2015-04-17 16:38 72KJalview SVG summary of results
[ ]jp_9W7escQ.tar.gz2015-04-17 16:38 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.