JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:44 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vlya1.name2015-04-17 19:13 0 Job name flag file
[ ]jp_bgsTok_.align2015-04-17 21:44 32KPSIBLAST alignment in FASTA format
[TXT]jp_bgsTok_.als2015-04-17 21:44 2.1KAlscript command file for PS/PDF output
[ ]jp_bgsTok_.blast.gz2015-04-17 21:44 84KCompressed PSIBLAST output file
[TXT]jp_bgsTok_.coils.csv2015-04-17 21:44 522 COILS output in CSV format
[ ]jp_bgsTok_.coilseq.lupas_142015-04-17 21:44 3.4KCOILS output, window length 14
[ ]jp_bgsTok_.coilseq.lupas_212015-04-17 21:44 3.4KCOILS output, window length 21
[ ]jp_bgsTok_.coilseq.lupas_282015-04-17 21:44 3.4KCOILS output, window length 28
[ ]jp_bgsTok_.concise2015-04-17 21:44 62KPrediction: coiled-coil, solvent, alignment
[ ]jp_bgsTok_.concise.blc2015-04-17 21:44 32KBLC format prediction and alignment data
[ ]jp_bgsTok_.concise.fasta2015-04-17 21:44 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_bgsTok_.concise.pdf2015-04-17 21:44 210KPDF prediction and alignment data
[ ]jp_bgsTok_.concise.ps2015-04-17 21:44 3.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_bgsTok_.fasta2015-04-17 21:38 96 Input query sequence in FASTA format
[ ]jp_bgsTok_.full_MSA.fasta2015-04-17 21:44 101KFull MSA before JPred filters in FASTA
[TXT]jp_bgsTok_.full_MSA.fasta.noGaps.html2015-04-17 21:44 100KFull MSA before JPred filters in FASTA
[TXT]jp_bgsTok_.full_MSA.fasta.withGaps.html2015-04-17 21:44 726KFull MSA before JPred filters in FASTA
[ ]jp_bgsTok_.hmm2015-04-17 21:44 15KHHMer2 profile of the alignment
[TXT]jp_bgsTok_.html2015-04-17 21:44 101KHTML prediction and alignment data
[ ]jp_bgsTok_.input2015-04-17 19:13 89 Raw input data for analysis
[ ]jp_bgsTok_.jalview2015-04-17 21:44 2.4KJalview annotation file for alignment
[ ]jp_bgsTok_.jnet2015-04-17 21:44 3.1KJnet secondary structure output
[TXT]jp_bgsTok_.profile2015-04-17 21:42 13KPSIBLAST profile from alignment
[ ]jp_bgsTok_.pssm2015-04-17 21:44 18KPSIBLAST PSSM for Jnet
[TXT]jp_bgsTok_.results.html2016-02-15 12:18 43KJPred results page
[TXT]jp_bgsTok_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_bgsTok_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_bgsTok_.seq2015-04-17 19:13 96 Sequence data file
[TXT]jp_bgsTok_.simple.html2015-04-17 21:44 1.2KBrief HTML: sequence and prediction only
[TXT]jp_bgsTok_.svg.html2015-04-17 21:44 35KJalview SVG summary of results
[ ]jp_bgsTok_.tar.gz2015-04-17 21:44 438KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.