JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:40 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vq8l1.name2015-04-17 16:10 0 Job name flag file
[ ]jp_j23a2dJ.align2015-04-17 16:40 140KPSIBLAST alignment in FASTA format
[TXT]jp_j23a2dJ.als2015-04-17 16:40 2.6KAlscript command file for PS/PDF output
[ ]jp_j23a2dJ.blast.gz2015-04-17 16:39 1.7MCompressed PSIBLAST output file
[TXT]jp_j23a2dJ.coils.csv2015-04-17 16:40 900 COILS output in CSV format
[ ]jp_j23a2dJ.coilseq.lupas_142015-04-17 16:40 6.1KCOILS output, window length 14
[ ]jp_j23a2dJ.coilseq.lupas_212015-04-17 16:40 6.1KCOILS output, window length 21
[ ]jp_j23a2dJ.coilseq.lupas_282015-04-17 16:40 6.1KCOILS output, window length 28
[ ]jp_j23a2dJ.concise2015-04-17 16:40 273KPrediction: coiled-coil, solvent, alignment
[ ]jp_j23a2dJ.concise.blc2015-04-17 16:40 139KBLC format prediction and alignment data
[ ]jp_j23a2dJ.concise.fasta2015-04-17 16:40 141KPrediction: coiled-coil, solvent, alignment
[ ]jp_j23a2dJ.concise.pdf2015-04-17 16:40 877KPDF prediction and alignment data
[ ]jp_j23a2dJ.concise.ps2015-04-17 16:40 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_j23a2dJ.fasta2015-04-17 16:35 160 Input query sequence in FASTA format
[ ]jp_j23a2dJ.full_MSA.fasta2015-04-17 16:39 4.0MFull MSA before JPred filters in FASTA
[TXT]jp_j23a2dJ.full_MSA.fasta.noGaps.html2015-04-17 16:40 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_j23a2dJ.full_MSA.fasta.withGaps.html2015-04-17 16:40 15MFull MSA before JPred filters in FASTA
[ ]jp_j23a2dJ.hmm2015-04-17 16:40 27KHHMer2 profile of the alignment
[TXT]jp_j23a2dJ.html2015-04-17 16:40 316KHTML prediction and alignment data
[ ]jp_j23a2dJ.input2015-04-17 16:10 152 Raw input data for analysis
[ ]jp_j23a2dJ.jalview2015-04-17 16:40 3.7KJalview annotation file for alignment
[ ]jp_j23a2dJ.jnet2015-04-17 16:40 5.4KJnet secondary structure output
[TXT]jp_j23a2dJ.profile2015-04-17 16:37 23KPSIBLAST profile from alignment
[ ]jp_j23a2dJ.pssm2015-04-17 16:40 31KPSIBLAST PSSM for Jnet
[TXT]jp_j23a2dJ.results.html2016-02-15 12:18 68KJPred results page
[TXT]jp_j23a2dJ.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_j23a2dJ.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_j23a2dJ.seq2015-04-17 16:10 160 Sequence data file
[TXT]jp_j23a2dJ.simple.html2015-04-17 16:40 1.4KBrief HTML: sequence and prediction only
[TXT]jp_j23a2dJ.svg.html2015-04-17 16:40 60KJalview SVG summary of results
[ ]jp_j23a2dJ.tar.gz2015-04-17 16:40 4.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.