JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:39 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vq8x1.name2015-04-17 18:00 0 Job name flag file
[ ]jp_iDa8GIy.align2015-04-17 19:38 44KPSIBLAST alignment in FASTA format
[TXT]jp_iDa8GIy.als2015-04-17 19:38 2.2KAlscript command file for PS/PDF output
[ ]jp_iDa8GIy.blast.gz2015-04-17 19:38 145KCompressed PSIBLAST output file
[TXT]jp_iDa8GIy.coils.csv2015-04-17 19:38 522 COILS output in CSV format
[ ]jp_iDa8GIy.coilseq.lupas_142015-04-17 19:38 3.4KCOILS output, window length 14
[ ]jp_iDa8GIy.coilseq.lupas_212015-04-17 19:38 3.4KCOILS output, window length 21
[ ]jp_iDa8GIy.coilseq.lupas_282015-04-17 19:38 3.4KCOILS output, window length 28
[ ]jp_iDa8GIy.concise2015-04-17 19:38 85KPrediction: coiled-coil, solvent, alignment
[ ]jp_iDa8GIy.concise.blc2015-04-17 19:38 44KBLC format prediction and alignment data
[ ]jp_iDa8GIy.concise.fasta2015-04-17 19:38 45KPrediction: coiled-coil, solvent, alignment
[ ]jp_iDa8GIy.concise.pdf2015-04-17 19:39 270KPDF prediction and alignment data
[ ]jp_iDa8GIy.concise.ps2015-04-17 19:38 4.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_iDa8GIy.fasta2015-04-17 19:34 96 Input query sequence in FASTA format
[ ]jp_iDa8GIy.full_MSA.fasta2015-04-17 19:38 302KFull MSA before JPred filters in FASTA
[TXT]jp_iDa8GIy.full_MSA.fasta.noGaps.html2015-04-17 19:39 186KFull MSA before JPred filters in FASTA
[TXT]jp_iDa8GIy.full_MSA.fasta.withGaps.html2015-04-17 19:39 1.2MFull MSA before JPred filters in FASTA
[ ]jp_iDa8GIy.hmm2015-04-17 19:38 15KHHMer2 profile of the alignment
[TXT]jp_iDa8GIy.html2015-04-17 19:38 137KHTML prediction and alignment data
[ ]jp_iDa8GIy.input2015-04-17 18:00 89 Raw input data for analysis
[ ]jp_iDa8GIy.jalview2015-04-17 19:38 2.5KJalview annotation file for alignment
[ ]jp_iDa8GIy.jnet2015-04-17 19:38 3.1KJnet secondary structure output
[TXT]jp_iDa8GIy.profile2015-04-17 19:35 13KPSIBLAST profile from alignment
[ ]jp_iDa8GIy.pssm2015-04-17 19:38 18KPSIBLAST PSSM for Jnet
[TXT]jp_iDa8GIy.results.html2016-02-15 12:18 44KJPred results page
[TXT]jp_iDa8GIy.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_iDa8GIy.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_iDa8GIy.seq2015-04-17 18:00 96 Sequence data file
[TXT]jp_iDa8GIy.simple.html2015-04-17 19:38 1.2KBrief HTML: sequence and prediction only
[TXT]jp_iDa8GIy.svg.html2015-04-17 19:39 36KJalview SVG summary of results
[ ]jp_iDa8GIy.tar.gz2015-04-17 19:39 586KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.