JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:41 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1vr7a_.name2015-04-17 16:10 0 Job name flag file
[ ]jp__PfdpP7.align2015-04-17 16:40 111KPSIBLAST alignment in FASTA format
[TXT]jp__PfdpP7.als2015-04-17 16:40 2.5KAlscript command file for PS/PDF output
[ ]jp__PfdpP7.blast.gz2015-04-17 16:39 484KCompressed PSIBLAST output file
[TXT]jp__PfdpP7.coils.csv2015-04-17 16:40 750 COILS output in CSV format
[ ]jp__PfdpP7.coilseq.lupas_142015-04-17 16:40 5.0KCOILS output, window length 14
[ ]jp__PfdpP7.coilseq.lupas_212015-04-17 16:40 5.0KCOILS output, window length 21
[ ]jp__PfdpP7.coilseq.lupas_282015-04-17 16:40 5.0KCOILS output, window length 28
[ ]jp__PfdpP7.concise2015-04-17 16:40 216KPrediction: coiled-coil, solvent, alignment
[ ]jp__PfdpP7.concise.blc2015-04-17 16:40 111KBLC format prediction and alignment data
[ ]jp__PfdpP7.concise.fasta2015-04-17 16:40 112KPrediction: coiled-coil, solvent, alignment
[ ]jp__PfdpP7.concise.pdf2015-04-17 16:40 741KPDF prediction and alignment data
[ ]jp__PfdpP7.concise.ps2015-04-17 16:40 13MPrediction: coiled-coil, solvent, alignment
[ ]jp__PfdpP7.fasta2015-04-17 16:35 134 Input query sequence in FASTA format
[ ]jp__PfdpP7.full_MSA.fasta2015-04-17 16:39 821KFull MSA before JPred filters in FASTA
[TXT]jp__PfdpP7.full_MSA.fasta.noGaps.html2015-04-17 16:40 335KFull MSA before JPred filters in FASTA
[TXT]jp__PfdpP7.full_MSA.fasta.withGaps.html2015-04-17 16:40 3.2MFull MSA before JPred filters in FASTA
[ ]jp__PfdpP7.hmm2015-04-17 16:40 23KHHMer2 profile of the alignment
[TXT]jp__PfdpP7.html2015-04-17 16:40 279KHTML prediction and alignment data
[ ]jp__PfdpP7.input2015-04-17 16:10 127 Raw input data for analysis
[ ]jp__PfdpP7.jalview2015-04-17 16:40 3.2KJalview annotation file for alignment
[ ]jp__PfdpP7.jnet2015-04-17 16:40 4.4KJnet secondary structure output
[TXT]jp__PfdpP7.profile2015-04-17 16:38 19KPSIBLAST profile from alignment
[ ]jp__PfdpP7.pssm2015-04-17 16:40 26KPSIBLAST PSSM for Jnet
[TXT]jp__PfdpP7.results.html2016-02-15 12:19 57KJPred results page
[TXT]jp__PfdpP7.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__PfdpP7.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__PfdpP7.seq2015-04-17 16:10 134 Sequence data file
[TXT]jp__PfdpP7.simple.html2015-04-17 16:40 1.3KBrief HTML: sequence and prediction only
[TXT]jp__PfdpP7.svg.html2015-04-17 16:41 49KJalview SVG summary of results
[ ]jp__PfdpP7.tar.gz2015-04-17 16:41 1.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.