JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:03 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wnaa_.name2015-04-17 18:37 0 Job name flag file
[ ]jp_OrPj6Mi.align2015-04-17 21:03 2.0KPSIBLAST alignment in FASTA format
[TXT]jp_OrPj6Mi.als2015-04-17 21:03 2.4KAlscript command file for PS/PDF output
[ ]jp_OrPj6Mi.blast.gz2015-04-17 21:03 4.5KCompressed PSIBLAST output file
[TXT]jp_OrPj6Mi.coils.csv2015-04-17 21:03 792 COILS output in CSV format
[ ]jp_OrPj6Mi.coilseq.lupas_142015-04-17 21:03 5.3KCOILS output, window length 14
[ ]jp_OrPj6Mi.coilseq.lupas_212015-04-17 21:03 5.3KCOILS output, window length 21
[ ]jp_OrPj6Mi.coilseq.lupas_282015-04-17 21:03 5.3KCOILS output, window length 28
[ ]jp_OrPj6Mi.concise2015-04-17 21:03 9.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_OrPj6Mi.concise.blc2015-04-17 21:03 3.9KBLC format prediction and alignment data
[ ]jp_OrPj6Mi.concise.fasta2015-04-17 21:03 3.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_OrPj6Mi.concise.pdf2015-04-17 21:03 27KPDF prediction and alignment data
[ ]jp_OrPj6Mi.concise.ps2015-04-17 21:03 455KPrediction: coiled-coil, solvent, alignment
[ ]jp_OrPj6Mi.fasta2015-04-17 20:35 141 Input query sequence in FASTA format
[ ]jp_OrPj6Mi.full_MSA.fasta2015-04-17 21:03 3.4KFull MSA before JPred filters in FASTA
[TXT]jp_OrPj6Mi.full_MSA.fasta.noGaps.html2015-04-17 21:03 5.4KFull MSA before JPred filters in FASTA
[TXT]jp_OrPj6Mi.full_MSA.fasta.withGaps.html2015-04-17 21:03 8.7KFull MSA before JPred filters in FASTA
[ ]jp_OrPj6Mi.hmm2015-04-17 21:03 24KHHMer2 profile of the alignment
[TXT]jp_OrPj6Mi.html2015-04-17 21:03 18KHTML prediction and alignment data
[ ]jp_OrPj6Mi.input2015-04-17 18:37 134 Raw input data for analysis
[ ]jp_OrPj6Mi.jalview2015-04-17 21:03 3.4KJalview annotation file for alignment
[ ]jp_OrPj6Mi.jnet2015-04-17 21:03 4.7KJnet secondary structure output
[TXT]jp_OrPj6Mi.profile2015-04-17 20:49 21KPSIBLAST profile from alignment
[ ]jp_OrPj6Mi.pssm2015-04-17 21:03 27KPSIBLAST PSSM for Jnet
[TXT]jp_OrPj6Mi.results.html2016-02-15 12:19 61KJPred results page
[TXT]jp_OrPj6Mi.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_OrPj6Mi.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_OrPj6Mi.seq2015-04-17 18:37 141 Sequence data file
[TXT]jp_OrPj6Mi.simple.html2015-04-17 21:03 1.3KBrief HTML: sequence and prediction only
[TXT]jp_OrPj6Mi.svg.html2015-04-17 21:03 53KJalview SVG summary of results
[ ]jp_OrPj6Mi.tar.gz2015-04-17 21:03 67KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.