JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:42 4.8KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xaka_.name2015-04-17 15:34 0 Job name flag file
[ ]jp_rX8YvkW.align2015-04-17 15:42 334 PSIBLAST alignment in FASTA format
[TXT]jp_rX8YvkW.als2015-04-17 15:42 1.9KAlscript command file for PS/PDF output
[ ]jp_rX8YvkW.blast.gz2015-04-17 15:42 1.7KCompressed PSIBLAST output file
[TXT]jp_rX8YvkW.coils.csv2015-04-17 15:42 438 COILS output in CSV format
[ ]jp_rX8YvkW.coilseq.lupas_142015-04-17 15:42 2.9KCOILS output, window length 14
[ ]jp_rX8YvkW.coilseq.lupas_212015-04-17 15:42 2.9KCOILS output, window length 21
[ ]jp_rX8YvkW.coilseq.lupas_282015-04-17 15:42 2.9KCOILS output, window length 28
[ ]jp_rX8YvkW.concise2015-04-17 15:42 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_rX8YvkW.concise.blc2015-04-17 15:42 1.4KBLC format prediction and alignment data
[ ]jp_rX8YvkW.concise.fasta2015-04-17 15:42 1.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_rX8YvkW.concise.pdf2015-04-17 15:42 9.2KPDF prediction and alignment data
[ ]jp_rX8YvkW.concise.ps2015-04-17 15:42 143KPrediction: coiled-coil, solvent, alignment
[ ]jp_rX8YvkW.fasta2015-04-17 15:40 81 Input query sequence in FASTA format
[ ]jp_rX8YvkW.full_MSA.fasta2015-04-17 15:42 334 Full MSA before JPred filters in FASTA
[TXT]jp_rX8YvkW.full_MSA.fasta.noGaps.html2015-04-17 15:42 886 Full MSA before JPred filters in FASTA
[TXT]jp_rX8YvkW.full_MSA.fasta.withGaps.html2015-04-17 15:42 886 Full MSA before JPred filters in FASTA
[ ]jp_rX8YvkW.hmm2015-04-17 15:42 13KHHMer2 profile of the alignment
[TXT]jp_rX8YvkW.html2015-04-17 15:42 7.7KHTML prediction and alignment data
[ ]jp_rX8YvkW.input2015-04-17 15:33 75 Raw input data for analysis
[ ]jp_rX8YvkW.jalview2015-04-17 15:42 2.2KJalview annotation file for alignment
[ ]jp_rX8YvkW.jnet2015-04-17 15:42 2.6KJnet secondary structure output
[TXT]jp_rX8YvkW.profile2015-04-17 15:41 11KPSIBLAST profile from alignment
[ ]jp_rX8YvkW.pssm2015-04-17 15:42 15KPSIBLAST PSSM for Jnet
[TXT]jp_rX8YvkW.results.html2016-02-15 12:19 38KJPred results page
[TXT]jp_rX8YvkW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_rX8YvkW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_rX8YvkW.seq2015-04-17 15:33 81 Sequence data file
[TXT]jp_rX8YvkW.simple.html2015-04-17 15:42 1.1KBrief HTML: sequence and prediction only
[TXT]jp_rX8YvkW.svg.html2015-04-17 15:42 30KJalview SVG summary of results
[ ]jp_rX8YvkW.tar.gz2015-04-17 15:42 29KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.