JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:34 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xkpb1.name2015-04-17 17:24 0 Job name flag file
[ ]jp_Vc9W_St.align2015-04-17 18:34 4.8KPSIBLAST alignment in FASTA format
[TXT]jp_Vc9W_St.als2015-04-17 18:34 2.3KAlscript command file for PS/PDF output
[ ]jp_Vc9W_St.blast.gz2015-04-17 18:34 9.6KCompressed PSIBLAST output file
[TXT]jp_Vc9W_St.coils.csv2015-04-17 18:34 756 COILS output in CSV format
[ ]jp_Vc9W_St.coilseq.lupas_142015-04-17 18:34 5.1KCOILS output, window length 14
[ ]jp_Vc9W_St.coilseq.lupas_212015-04-17 18:34 5.1KCOILS output, window length 21
[ ]jp_Vc9W_St.coilseq.lupas_282015-04-17 18:34 5.1KCOILS output, window length 28
[ ]jp_Vc9W_St.concise2015-04-17 18:34 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_Vc9W_St.concise.blc2015-04-17 18:34 6.6KBLC format prediction and alignment data
[ ]jp_Vc9W_St.concise.fasta2015-04-17 18:34 6.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_Vc9W_St.concise.pdf2015-04-17 18:34 78KPDF prediction and alignment data
[ ]jp_Vc9W_St.concise.ps2015-04-17 18:34 1.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_Vc9W_St.fasta2015-04-17 18:31 135 Input query sequence in FASTA format
[ ]jp_Vc9W_St.full_MSA.fasta2015-04-17 18:34 8.4KFull MSA before JPred filters in FASTA
[TXT]jp_Vc9W_St.full_MSA.fasta.noGaps.html2015-04-17 18:34 11KFull MSA before JPred filters in FASTA
[TXT]jp_Vc9W_St.full_MSA.fasta.withGaps.html2015-04-17 18:34 31KFull MSA before JPred filters in FASTA
[ ]jp_Vc9W_St.hmm2015-04-17 18:34 23KHHMer2 profile of the alignment
[TXT]jp_Vc9W_St.html2015-04-17 18:34 26KHTML prediction and alignment data
[ ]jp_Vc9W_St.input2015-04-17 17:24 128 Raw input data for analysis
[ ]jp_Vc9W_St.jalview2015-04-17 18:34 3.3KJalview annotation file for alignment
[ ]jp_Vc9W_St.jnet2015-04-17 18:34 4.5KJnet secondary structure output
[TXT]jp_Vc9W_St.profile2015-04-17 18:33 20KPSIBLAST profile from alignment
[ ]jp_Vc9W_St.pssm2015-04-17 18:34 26KPSIBLAST PSSM for Jnet
[TXT]jp_Vc9W_St.results.html2016-02-15 12:19 58KJPred results page
[TXT]jp_Vc9W_St.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Vc9W_St.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Vc9W_St.seq2015-04-17 17:24 135 Sequence data file
[TXT]jp_Vc9W_St.simple.html2015-04-17 18:34 1.3KBrief HTML: sequence and prediction only
[TXT]jp_Vc9W_St.svg.html2015-04-17 18:34 50KJalview SVG summary of results
[ ]jp_Vc9W_St.tar.gz2015-04-17 18:34 128KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.