JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:36 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xmka1.name2015-04-17 17:24 0 Job name flag file
[ ]jp_2YAnHo3.align2015-04-17 18:35 15KPSIBLAST alignment in FASTA format
[TXT]jp_2YAnHo3.als2015-04-17 18:35 2.1KAlscript command file for PS/PDF output
[ ]jp_2YAnHo3.blast.gz2015-04-17 18:35 32KCompressed PSIBLAST output file
[TXT]jp_2YAnHo3.coils.csv2015-04-17 18:35 468 COILS output in CSV format
[ ]jp_2YAnHo3.coilseq.lupas_142015-04-17 18:35 3.1KCOILS output, window length 14
[ ]jp_2YAnHo3.coilseq.lupas_212015-04-17 18:35 3.1KCOILS output, window length 21
[ ]jp_2YAnHo3.coilseq.lupas_282015-04-17 18:35 3.1KCOILS output, window length 28
[ ]jp_2YAnHo3.concise2015-04-17 18:35 31KPrediction: coiled-coil, solvent, alignment
[ ]jp_2YAnHo3.concise.blc2015-04-17 18:35 16KBLC format prediction and alignment data
[ ]jp_2YAnHo3.concise.fasta2015-04-17 18:35 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_2YAnHo3.concise.pdf2015-04-17 18:35 87KPDF prediction and alignment data
[ ]jp_2YAnHo3.concise.ps2015-04-17 18:35 1.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_2YAnHo3.fasta2015-04-17 18:32 87 Input query sequence in FASTA format
[ ]jp_2YAnHo3.full_MSA.fasta2015-04-17 18:35 61KFull MSA before JPred filters in FASTA
[TXT]jp_2YAnHo3.full_MSA.fasta.noGaps.html2015-04-17 18:35 69KFull MSA before JPred filters in FASTA
[TXT]jp_2YAnHo3.full_MSA.fasta.withGaps.html2015-04-17 18:35 371KFull MSA before JPred filters in FASTA
[ ]jp_2YAnHo3.hmm2015-04-17 18:35 14KHHMer2 profile of the alignment
[TXT]jp_2YAnHo3.html2015-04-17 18:35 55KHTML prediction and alignment data
[ ]jp_2YAnHo3.input2015-04-17 17:24 80 Raw input data for analysis
[ ]jp_2YAnHo3.jalview2015-04-17 18:35 2.3KJalview annotation file for alignment
[ ]jp_2YAnHo3.jnet2015-04-17 18:35 2.7KJnet secondary structure output
[TXT]jp_2YAnHo3.profile2015-04-17 18:34 12KPSIBLAST profile from alignment
[ ]jp_2YAnHo3.pssm2015-04-17 18:35 16KPSIBLAST PSSM for Jnet
[TXT]jp_2YAnHo3.results.html2016-02-15 12:19 40KJPred results page
[TXT]jp_2YAnHo3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_2YAnHo3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_2YAnHo3.seq2015-04-17 17:24 87 Sequence data file
[TXT]jp_2YAnHo3.simple.html2015-04-17 18:35 1.1KBrief HTML: sequence and prediction only
[TXT]jp_2YAnHo3.svg.html2015-04-17 18:35 32KJalview SVG summary of results
[ ]jp_2YAnHo3.tar.gz2015-04-17 18:36 183KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.