JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:34 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xsza2.name2015-04-17 17:24 0 Job name flag file
[ ]jp_UUgk_7o.align2015-04-17 18:34 1.2KPSIBLAST alignment in FASTA format
[TXT]jp_UUgk_7o.als2015-04-17 18:34 2.9KAlscript command file for PS/PDF output
[ ]jp_UUgk_7o.blast.gz2015-04-17 18:34 3.0KCompressed PSIBLAST output file
[TXT]jp_UUgk_7o.coils.csv2015-04-17 18:34 972 COILS output in CSV format
[ ]jp_UUgk_7o.coilseq.lupas_142015-04-17 18:34 6.6KCOILS output, window length 14
[ ]jp_UUgk_7o.coilseq.lupas_212015-04-17 18:34 6.6KCOILS output, window length 21
[ ]jp_UUgk_7o.coilseq.lupas_282015-04-17 18:34 6.6KCOILS output, window length 28
[ ]jp_UUgk_7o.concise2015-04-17 18:34 9.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_UUgk_7o.concise.blc2015-04-17 18:34 3.6KBLC format prediction and alignment data
[ ]jp_UUgk_7o.concise.fasta2015-04-17 18:34 2.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_UUgk_7o.concise.pdf2015-04-17 18:34 24KPDF prediction and alignment data
[ ]jp_UUgk_7o.concise.ps2015-04-17 18:34 417KPrediction: coiled-coil, solvent, alignment
[ ]jp_UUgk_7o.fasta2015-04-17 18:32 172 Input query sequence in FASTA format
[ ]jp_UUgk_7o.full_MSA.fasta2015-04-17 18:34 2.0KFull MSA before JPred filters in FASTA
[TXT]jp_UUgk_7o.full_MSA.fasta.noGaps.html2015-04-17 18:34 3.1KFull MSA before JPred filters in FASTA
[TXT]jp_UUgk_7o.full_MSA.fasta.withGaps.html2015-04-17 18:34 4.0KFull MSA before JPred filters in FASTA
[ ]jp_UUgk_7o.hmm2015-04-17 18:34 29KHHMer2 profile of the alignment
[TXT]jp_UUgk_7o.html2015-04-17 18:34 18KHTML prediction and alignment data
[ ]jp_UUgk_7o.input2015-04-17 17:24 164 Raw input data for analysis
[ ]jp_UUgk_7o.jalview2015-04-17 18:34 4.0KJalview annotation file for alignment
[ ]jp_UUgk_7o.jnet2015-04-17 18:34 5.8KJnet secondary structure output
[TXT]jp_UUgk_7o.profile2015-04-17 18:34 25KPSIBLAST profile from alignment
[ ]jp_UUgk_7o.pssm2015-04-17 18:34 34KPSIBLAST PSSM for Jnet
[TXT]jp_UUgk_7o.results.html2016-02-15 12:19 74KJPred results page
[TXT]jp_UUgk_7o.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_UUgk_7o.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_UUgk_7o.seq2015-04-17 17:24 172 Sequence data file
[TXT]jp_UUgk_7o.simple.html2015-04-17 18:34 1.5KBrief HTML: sequence and prediction only
[TXT]jp_UUgk_7o.svg.html2015-04-17 18:34 66KJalview SVG summary of results
[ ]jp_UUgk_7o.tar.gz2015-04-17 18:34 65KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.