JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1yb3a1.name2015-04-17 16:12 0 Job name flag file
[ ]jp_nt_AF0l.align2015-04-17 16:43 3.1KPSIBLAST alignment in FASTA format
[TXT]jp_nt_AF0l.als2015-04-17 16:43 3.1KAlscript command file for PS/PDF output
[ ]jp_nt_AF0l.blast.gz2015-04-17 16:43 6.7KCompressed PSIBLAST output file
[TXT]jp_nt_AF0l.coils.csv2015-04-17 16:43 1.0KCOILS output in CSV format
[ ]jp_nt_AF0l.coilseq.lupas_142015-04-17 16:43 7.0KCOILS output, window length 14
[ ]jp_nt_AF0l.coilseq.lupas_212015-04-17 16:43 7.0KCOILS output, window length 21
[ ]jp_nt_AF0l.coilseq.lupas_282015-04-17 16:43 7.0KCOILS output, window length 28
[ ]jp_nt_AF0l.concise2015-04-17 16:43 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_nt_AF0l.concise.blc2015-04-17 16:43 5.6KBLC format prediction and alignment data
[ ]jp_nt_AF0l.concise.fasta2015-04-17 16:43 4.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_nt_AF0l.concise.pdf2015-04-17 16:43 40KPDF prediction and alignment data
[ ]jp_nt_AF0l.concise.ps2015-04-17 16:43 674KPrediction: coiled-coil, solvent, alignment
[ ]jp_nt_AF0l.fasta2015-04-17 16:38 181 Input query sequence in FASTA format
[ ]jp_nt_AF0l.full_MSA.fasta2015-04-17 16:43 5.5KFull MSA before JPred filters in FASTA
[TXT]jp_nt_AF0l.full_MSA.fasta.noGaps.html2015-04-17 16:43 7.3KFull MSA before JPred filters in FASTA
[TXT]jp_nt_AF0l.full_MSA.fasta.withGaps.html2015-04-17 16:43 19KFull MSA before JPred filters in FASTA
[ ]jp_nt_AF0l.hmm2015-04-17 16:43 31KHHMer2 profile of the alignment
[TXT]jp_nt_AF0l.html2015-04-17 16:43 24KHTML prediction and alignment data
[ ]jp_nt_AF0l.input2015-04-17 16:12 173 Raw input data for analysis
[ ]jp_nt_AF0l.jalview2015-04-17 16:43 4.2KJalview annotation file for alignment
[ ]jp_nt_AF0l.jnet2015-04-17 16:43 6.1KJnet secondary structure output
[TXT]jp_nt_AF0l.profile2015-04-17 16:42 27KPSIBLAST profile from alignment
[ ]jp_nt_AF0l.pssm2015-04-17 16:43 36KPSIBLAST PSSM for Jnet
[TXT]jp_nt_AF0l.results.html2016-02-15 12:19 78KJPred results page
[TXT]jp_nt_AF0l.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_nt_AF0l.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_nt_AF0l.seq2015-04-17 16:12 181 Sequence data file
[TXT]jp_nt_AF0l.simple.html2015-04-17 16:43 1.5KBrief HTML: sequence and prediction only
[TXT]jp_nt_AF0l.svg.html2015-04-17 16:43 69KJalview SVG summary of results
[ ]jp_nt_AF0l.tar.gz2015-04-17 16:43 94KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.