JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:36 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1ylxa1.name2015-04-17 17:25 0 Job name flag file
[ ]jp_0rQmZoH.align2015-04-17 18:36 1.7KPSIBLAST alignment in FASTA format
[TXT]jp_0rQmZoH.als2015-04-17 18:36 2.3KAlscript command file for PS/PDF output
[ ]jp_0rQmZoH.blast.gz2015-04-17 18:36 4.1KCompressed PSIBLAST output file
[TXT]jp_0rQmZoH.coils.csv2015-04-17 18:36 630 COILS output in CSV format
[ ]jp_0rQmZoH.coilseq.lupas_142015-04-17 18:36 4.2KCOILS output, window length 14
[ ]jp_0rQmZoH.coilseq.lupas_212015-04-17 18:36 4.2KCOILS output, window length 21
[ ]jp_0rQmZoH.coilseq.lupas_282015-04-17 18:36 4.2KCOILS output, window length 28
[ ]jp_0rQmZoH.concise2015-04-17 18:36 7.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_0rQmZoH.concise.blc2015-04-17 18:36 3.2KBLC format prediction and alignment data
[ ]jp_0rQmZoH.concise.fasta2015-04-17 18:36 2.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_0rQmZoH.concise.pdf2015-04-17 18:36 21KPDF prediction and alignment data
[ ]jp_0rQmZoH.concise.ps2015-04-17 18:36 358KPrediction: coiled-coil, solvent, alignment
[ ]jp_0rQmZoH.fasta2015-04-17 18:34 114 Input query sequence in FASTA format
[ ]jp_0rQmZoH.full_MSA.fasta2015-04-17 18:36 2.7KFull MSA before JPred filters in FASTA
[TXT]jp_0rQmZoH.full_MSA.fasta.noGaps.html2015-04-17 18:36 4.7KFull MSA before JPred filters in FASTA
[TXT]jp_0rQmZoH.full_MSA.fasta.withGaps.html2015-04-17 18:36 7.7KFull MSA before JPred filters in FASTA
[ ]jp_0rQmZoH.hmm2015-04-17 18:36 19KHHMer2 profile of the alignment
[TXT]jp_0rQmZoH.html2015-04-17 18:36 15KHTML prediction and alignment data
[ ]jp_0rQmZoH.input2015-04-17 17:25 107 Raw input data for analysis
[ ]jp_0rQmZoH.jalview2015-04-17 18:36 2.8KJalview annotation file for alignment
[ ]jp_0rQmZoH.jnet2015-04-17 18:36 3.7KJnet secondary structure output
[TXT]jp_0rQmZoH.profile2015-04-17 18:35 16KPSIBLAST profile from alignment
[ ]jp_0rQmZoH.pssm2015-04-17 18:36 21KPSIBLAST PSSM for Jnet
[TXT]jp_0rQmZoH.results.html2016-02-15 12:19 50KJPred results page
[TXT]jp_0rQmZoH.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_0rQmZoH.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_0rQmZoH.seq2015-04-17 17:25 114 Sequence data file
[TXT]jp_0rQmZoH.simple.html2015-04-17 18:36 1.3KBrief HTML: sequence and prediction only
[TXT]jp_0rQmZoH.svg.html2015-04-17 18:36 42KJalview SVG summary of results
[ ]jp_0rQmZoH.tar.gz2015-04-17 18:36 56KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.