JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:41 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1yu0a1.name2015-04-17 17:25 0 Job name flag file
[ ]jp_Z99eiI7.align2015-04-17 18:40 6.4KPSIBLAST alignment in FASTA format
[TXT]jp_Z99eiI7.als2015-04-17 18:40 2.8KAlscript command file for PS/PDF output
[ ]jp_Z99eiI7.blast.gz2015-04-17 18:40 18KCompressed PSIBLAST output file
[TXT]jp_Z99eiI7.coils.csv2015-04-17 18:40 1.0KCOILS output in CSV format
[ ]jp_Z99eiI7.coilseq.lupas_142015-04-17 18:40 7.0KCOILS output, window length 14
[ ]jp_Z99eiI7.coilseq.lupas_212015-04-17 18:40 7.0KCOILS output, window length 21
[ ]jp_Z99eiI7.coilseq.lupas_282015-04-17 18:40 7.0KCOILS output, window length 28
[ ]jp_Z99eiI7.concise2015-04-17 18:40 19KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z99eiI7.concise.blc2015-04-17 18:40 8.8KBLC format prediction and alignment data
[ ]jp_Z99eiI7.concise.fasta2015-04-17 18:40 8.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z99eiI7.concise.pdf2015-04-17 18:40 90KPDF prediction and alignment data
[ ]jp_Z99eiI7.concise.ps2015-04-17 18:40 1.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_Z99eiI7.fasta2015-04-17 18:34 181 Input query sequence in FASTA format
[ ]jp_Z99eiI7.full_MSA.fasta2015-04-17 18:40 21KFull MSA before JPred filters in FASTA
[TXT]jp_Z99eiI7.full_MSA.fasta.noGaps.html2015-04-17 18:40 16KFull MSA before JPred filters in FASTA
[TXT]jp_Z99eiI7.full_MSA.fasta.withGaps.html2015-04-17 18:40 94KFull MSA before JPred filters in FASTA
[ ]jp_Z99eiI7.hmm2015-04-17 18:40 31KHHMer2 profile of the alignment
[TXT]jp_Z99eiI7.html2015-04-17 18:40 27KHTML prediction and alignment data
[ ]jp_Z99eiI7.input2015-04-17 17:25 173 Raw input data for analysis
[ ]jp_Z99eiI7.jalview2015-04-17 18:40 4.1KJalview annotation file for alignment
[ ]jp_Z99eiI7.jnet2015-04-17 18:40 6.1KJnet secondary structure output
[TXT]jp_Z99eiI7.profile2015-04-17 18:38 27KPSIBLAST profile from alignment
[ ]jp_Z99eiI7.pssm2015-04-17 18:40 36KPSIBLAST PSSM for Jnet
[TXT]jp_Z99eiI7.results.html2016-02-15 12:19 75KJPred results page
[TXT]jp_Z99eiI7.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Z99eiI7.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Z99eiI7.seq2015-04-17 17:25 181 Sequence data file
[TXT]jp_Z99eiI7.simple.html2015-04-17 18:40 1.5KBrief HTML: sequence and prediction only
[TXT]jp_Z99eiI7.svg.html2015-04-17 18:41 67KJalview SVG summary of results
[ ]jp_Z99eiI7.tar.gz2015-04-17 18:41 157KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.