JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:28 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z8ua_.name2015-04-17 17:17 0 Job name flag file
[ ]jp_BKASuwM.align2015-04-17 18:28 3.0KPSIBLAST alignment in FASTA format
[TXT]jp_BKASuwM.als2015-04-17 18:28 1.6KAlscript command file for PS/PDF output
[ ]jp_BKASuwM.blast.gz2015-04-17 18:28 5.6KCompressed PSIBLAST output file
[TXT]jp_BKASuwM.coils.csv2015-04-17 18:28 570 COILS output in CSV format
[ ]jp_BKASuwM.coilseq.lupas_142015-04-17 18:28 3.8KCOILS output, window length 14
[ ]jp_BKASuwM.coilseq.lupas_212015-04-17 18:28 3.8KCOILS output, window length 21
[ ]jp_BKASuwM.coilseq.lupas_282015-04-17 18:28 3.8KCOILS output, window length 28
[ ]jp_BKASuwM.concise2015-04-17 18:28 9.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_BKASuwM.concise.blc2015-04-17 18:28 4.3KBLC format prediction and alignment data
[ ]jp_BKASuwM.concise.fasta2015-04-17 18:28 4.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_BKASuwM.concise.pdf2015-04-17 18:28 28KPDF prediction and alignment data
[ ]jp_BKASuwM.concise.ps2015-04-17 18:28 487KPrediction: coiled-coil, solvent, alignment
[ ]jp_BKASuwM.fasta2015-04-17 18:24 104 Input query sequence in FASTA format
[ ]jp_BKASuwM.full_MSA.fasta2015-04-17 18:28 7.0KFull MSA before JPred filters in FASTA
[TXT]jp_BKASuwM.full_MSA.fasta.noGaps.html2015-04-17 18:28 12KFull MSA before JPred filters in FASTA
[TXT]jp_BKASuwM.full_MSA.fasta.withGaps.html2015-04-17 18:28 17KFull MSA before JPred filters in FASTA
[ ]jp_BKASuwM.hmm2015-04-17 18:28 17KHHMer2 profile of the alignment
[TXT]jp_BKASuwM.html2015-04-17 18:28 19KHTML prediction and alignment data
[ ]jp_BKASuwM.input2015-04-17 17:17 97 Raw input data for analysis
[ ]jp_BKASuwM.jalview2015-04-17 18:28 2.7KJalview annotation file for alignment
[ ]jp_BKASuwM.jnet2015-04-17 18:28 3.4KJnet secondary structure output
[TXT]jp_BKASuwM.profile2015-04-17 18:26 15KPSIBLAST profile from alignment
[ ]jp_BKASuwM.pssm2015-04-17 18:28 19KPSIBLAST PSSM for Jnet
[TXT]jp_BKASuwM.results.html2016-02-15 12:19 45KJPred results page
[TXT]jp_BKASuwM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_BKASuwM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_BKASuwM.seq2015-04-17 17:17 104 Sequence data file
[TXT]jp_BKASuwM.simple.html2015-04-17 18:28 1.1KBrief HTML: sequence and prediction only
[TXT]jp_BKASuwM.svg.html2015-04-17 18:28 37KJalview SVG summary of results
[ ]jp_BKASuwM.tar.gz2015-04-17 18:28 63KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.