JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:31 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z9ta_.name2015-04-17 16:14 0 Job name flag file
[ ]jp_iIbvWaE.align2015-04-17 17:30 249KPSIBLAST alignment in FASTA format
[TXT]jp_iIbvWaE.als2015-04-17 17:30 3.6KAlscript command file for PS/PDF output
[ ]jp_iIbvWaE.blast.gz2015-04-17 17:29 5.5MCompressed PSIBLAST output file
[TXT]jp_iIbvWaE.coils.csv2015-04-17 17:30 1.4KCOILS output in CSV format
[ ]jp_iIbvWaE.coilseq.lupas_142015-04-17 17:30 10KCOILS output, window length 14
[ ]jp_iIbvWaE.coilseq.lupas_212015-04-17 17:30 10KCOILS output, window length 21
[ ]jp_iIbvWaE.coilseq.lupas_282015-04-17 17:30 10KCOILS output, window length 28
[ ]jp_iIbvWaE.concise2015-04-17 17:30 492KPrediction: coiled-coil, solvent, alignment
[ ]jp_iIbvWaE.concise.blc2015-04-17 17:30 249KBLC format prediction and alignment data
[ ]jp_iIbvWaE.concise.fasta2015-04-17 17:30 252KPrediction: coiled-coil, solvent, alignment
[ ]jp_iIbvWaE.concise.pdf2015-04-17 17:31 1.7MPDF prediction and alignment data
[ ]jp_iIbvWaE.concise.ps2015-04-17 17:30 31MPrediction: coiled-coil, solvent, alignment
[ ]jp_iIbvWaE.fasta2015-04-17 16:40 256 Input query sequence in FASTA format
[ ]jp_iIbvWaE.full_MSA.fasta2015-04-17 17:29 9.9MFull MSA before JPred filters in FASTA
[TXT]jp_iIbvWaE.full_MSA.fasta.noGaps.html2015-04-17 17:31 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_iIbvWaE.full_MSA.fasta.withGaps.html2015-04-17 17:31 28MFull MSA before JPred filters in FASTA
[ ]jp_iIbvWaE.hmm2015-04-17 17:30 45KHHMer2 profile of the alignment
[TXT]jp_iIbvWaE.html2015-04-17 17:30 456KHTML prediction and alignment data
[ ]jp_iIbvWaE.input2015-04-17 16:14 247 Raw input data for analysis
[ ]jp_iIbvWaE.jalview2015-04-17 17:30 5.6KJalview annotation file for alignment
[ ]jp_iIbvWaE.jnet2015-04-17 17:30 8.8KJnet secondary structure output
[TXT]jp_iIbvWaE.profile2015-04-17 17:14 38KPSIBLAST profile from alignment
[ ]jp_iIbvWaE.pssm2015-04-17 17:30 52KPSIBLAST PSSM for Jnet
[TXT]jp_iIbvWaE.results.html2016-02-15 12:19 104KJPred results page
[TXT]jp_iIbvWaE.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_iIbvWaE.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_iIbvWaE.seq2015-04-17 16:14 256 Sequence data file
[TXT]jp_iIbvWaE.simple.html2015-04-17 17:30 1.7KBrief HTML: sequence and prediction only
[TXT]jp_iIbvWaE.svg.html2015-04-17 17:31 96KJalview SVG summary of results
[ ]jp_iIbvWaE.tar.gz2015-04-17 17:31 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.