JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_WEOjWmX.input2015-04-17 15:34 153 Raw input data for analysis
[ ]jp_WEOjWmX.seq2015-04-17 15:34 161 Sequence data file
[TXT]d1zcea1.name2015-04-17 15:34 0 Job name flag file
[ ]jp_WEOjWmX.fasta2015-04-17 15:42 161 Input query sequence in FASTA format
[TXT]jp_WEOjWmX.profile2015-04-17 15:44 24KPSIBLAST profile from alignment
[ ]jp_WEOjWmX.blast.gz2015-04-17 15:45 959KCompressed PSIBLAST output file
[ ]jp_WEOjWmX.full_MSA.fasta2015-04-17 15:45 1.5MFull MSA before JPred filters in FASTA
[ ]jp_WEOjWmX.align2015-04-17 15:46 160KPSIBLAST alignment in FASTA format
[ ]jp_WEOjWmX.pssm2015-04-17 15:46 31KPSIBLAST PSSM for Jnet
[ ]jp_WEOjWmX.hmm2015-04-17 15:46 27KHHMer2 profile of the alignment
[ ]jp_WEOjWmX.jnet2015-04-17 15:46 5.4KJnet secondary structure output
[ ]jp_WEOjWmX.coilseq.lupas_212015-04-17 15:46 6.1KCOILS output, window length 21
[ ]jp_WEOjWmX.coilseq.lupas_142015-04-17 15:46 6.1KCOILS output, window length 14
[ ]jp_WEOjWmX.coilseq.lupas_282015-04-17 15:46 6.1KCOILS output, window length 28
[TXT]jp_WEOjWmX.coils.csv2015-04-17 15:46 906 COILS output in CSV format
[ ]jp_WEOjWmX.concise2015-04-17 15:46 311KPrediction: coiled-coil, solvent, alignment
[TXT]jp_WEOjWmX.html2015-04-17 15:46 360KHTML prediction and alignment data
[TXT]jp_WEOjWmX.simple.html2015-04-17 15:46 1.4KBrief HTML: sequence and prediction only
[ ]jp_WEOjWmX.jalview2015-04-17 15:46 3.7KJalview annotation file for alignment
[ ]jp_WEOjWmX.concise.fasta2015-04-17 15:46 162KPrediction: coiled-coil, solvent, alignment
[ ]jp_WEOjWmX.concise.blc2015-04-17 15:46 160KBLC format prediction and alignment data
[TXT]jp_WEOjWmX.als2015-04-17 15:46 2.7KAlscript command file for PS/PDF output
[ ]jp_WEOjWmX.concise.ps2015-04-17 15:46 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_WEOjWmX.concise.pdf2015-04-17 15:47 1.0MPDF prediction and alignment data
[TXT]jp_WEOjWmX.full_MSA.fasta.withGaps.html2015-04-17 15:47 5.7MFull MSA before JPred filters in FASTA
[TXT]jp_WEOjWmX.full_MSA.fasta.noGaps.html2015-04-17 15:47 427KFull MSA before JPred filters in FASTA
[TXT]jp_WEOjWmX.svg.html2015-04-17 15:47 60KJalview SVG summary of results
[TXT]LOG2015-04-17 15:47 4.7KJPred server log file
[ ]jp_WEOjWmX.tar.gz2015-04-17 15:47 2.6MArchive containing complete results
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]jp_WEOjWmX.results.html2016-02-15 12:19 68KJPred results page
[TXT]jp_WEOjWmX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_WEOjWmX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.