JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:47 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2a26a1.name2015-04-17 15:36 0 Job name flag file
[ ]jp_I0qKnpz.align2015-04-17 15:47 726 PSIBLAST alignment in FASTA format
[TXT]jp_I0qKnpz.als2015-04-17 15:47 1.5KAlscript command file for PS/PDF output
[ ]jp_I0qKnpz.blast.gz2015-04-17 15:47 3.3KCompressed PSIBLAST output file
[TXT]jp_I0qKnpz.coils.csv2015-04-17 15:47 312 COILS output in CSV format
[ ]jp_I0qKnpz.coilseq.lupas_142015-04-17 15:47 2.0KCOILS output, window length 14
[ ]jp_I0qKnpz.coilseq.lupas_212015-04-17 15:47 2.0KCOILS output, window length 21
[ ]jp_I0qKnpz.coilseq.lupas_282015-04-17 15:47 2.0KCOILS output, window length 28
[ ]jp_I0qKnpz.concise2015-04-17 15:47 3.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_I0qKnpz.concise.blc2015-04-17 15:47 1.5KBLC format prediction and alignment data
[ ]jp_I0qKnpz.concise.fasta2015-04-17 15:47 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_I0qKnpz.concise.pdf2015-04-17 15:47 10KPDF prediction and alignment data
[ ]jp_I0qKnpz.concise.ps2015-04-17 15:47 156KPrediction: coiled-coil, solvent, alignment
[ ]jp_I0qKnpz.fasta2015-04-17 15:45 60 Input query sequence in FASTA format
[ ]jp_I0qKnpz.full_MSA.fasta2015-04-17 15:47 2.1KFull MSA before JPred filters in FASTA
[TXT]jp_I0qKnpz.full_MSA.fasta.noGaps.html2015-04-17 15:47 5.8KFull MSA before JPred filters in FASTA
[TXT]jp_I0qKnpz.full_MSA.fasta.withGaps.html2015-04-17 15:47 5.8KFull MSA before JPred filters in FASTA
[ ]jp_I0qKnpz.hmm2015-04-17 15:47 8.8KHHMer2 profile of the alignment
[TXT]jp_I0qKnpz.html2015-04-17 15:47 9.9KHTML prediction and alignment data
[ ]jp_I0qKnpz.input2015-04-17 15:36 54 Raw input data for analysis
[ ]jp_I0qKnpz.jalview2015-04-17 15:47 1.8KJalview annotation file for alignment
[ ]jp_I0qKnpz.jnet2015-04-17 15:47 1.8KJnet secondary structure output
[TXT]jp_I0qKnpz.profile2015-04-17 15:46 7.9KPSIBLAST profile from alignment
[ ]jp_I0qKnpz.pssm2015-04-17 15:47 10KPSIBLAST PSSM for Jnet
[TXT]jp_I0qKnpz.results.html2016-02-15 12:19 29KJPred results page
[TXT]jp_I0qKnpz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_I0qKnpz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_I0qKnpz.seq2015-04-17 15:36 60 Sequence data file
[TXT]jp_I0qKnpz.simple.html2015-04-17 15:47 1.0KBrief HTML: sequence and prediction only
[TXT]jp_I0qKnpz.svg.html2015-04-17 15:47 21KJalview SVG summary of results
[ ]jp_I0qKnpz.tar.gz2015-04-17 15:47 29KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.