JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ahma1.name2015-04-17 18:03 0 Job name flag file
[ ]jp_lLa3YVo.align2015-04-17 19:45 1.3KPSIBLAST alignment in FASTA format
[TXT]jp_lLa3YVo.als2015-04-17 19:45 1.7KAlscript command file for PS/PDF output
[ ]jp_lLa3YVo.blast.gz2015-04-17 19:45 8.7KCompressed PSIBLAST output file
[TXT]jp_lLa3YVo.coils.csv2015-04-17 19:45 468 COILS output in CSV format
[ ]jp_lLa3YVo.coilseq.lupas_142015-04-17 19:45 3.1KCOILS output, window length 14
[ ]jp_lLa3YVo.coilseq.lupas_212015-04-17 19:45 3.1KCOILS output, window length 21
[ ]jp_lLa3YVo.coilseq.lupas_282015-04-17 19:45 3.1KCOILS output, window length 28
[ ]jp_lLa3YVo.concise2015-04-17 19:45 5.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLa3YVo.concise.blc2015-04-17 19:45 2.5KBLC format prediction and alignment data
[ ]jp_lLa3YVo.concise.fasta2015-04-17 19:45 2.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLa3YVo.concise.pdf2015-04-17 19:45 18KPDF prediction and alignment data
[ ]jp_lLa3YVo.concise.ps2015-04-17 19:45 286KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLa3YVo.fasta2015-04-17 19:40 87 Input query sequence in FASTA format
[ ]jp_lLa3YVo.full_MSA.fasta2015-04-17 19:45 10KFull MSA before JPred filters in FASTA
[TXT]jp_lLa3YVo.full_MSA.fasta.noGaps.html2015-04-17 19:45 21KFull MSA before JPred filters in FASTA
[TXT]jp_lLa3YVo.full_MSA.fasta.withGaps.html2015-04-17 19:45 27KFull MSA before JPred filters in FASTA
[ ]jp_lLa3YVo.hmm2015-04-17 19:45 14KHHMer2 profile of the alignment
[TXT]jp_lLa3YVo.html2015-04-17 19:45 14KHTML prediction and alignment data
[ ]jp_lLa3YVo.input2015-04-17 18:03 80 Raw input data for analysis
[ ]jp_lLa3YVo.jalview2015-04-17 19:45 2.3KJalview annotation file for alignment
[ ]jp_lLa3YVo.jnet2015-04-17 19:45 2.7KJnet secondary structure output
[TXT]jp_lLa3YVo.profile2015-04-17 19:44 12KPSIBLAST profile from alignment
[ ]jp_lLa3YVo.pssm2015-04-17 19:45 16KPSIBLAST PSSM for Jnet
[TXT]jp_lLa3YVo.results.html2016-02-15 12:19 39KJPred results page
[TXT]jp_lLa3YVo.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_lLa3YVo.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_lLa3YVo.seq2015-04-17 18:03 87 Sequence data file
[TXT]jp_lLa3YVo.simple.html2015-04-17 19:45 1.1KBrief HTML: sequence and prediction only
[TXT]jp_lLa3YVo.svg.html2015-04-17 19:45 31KJalview SVG summary of results
[ ]jp_lLa3YVo.tar.gz2015-04-17 19:45 53KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.