JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ap3a1.name2015-04-17 18:03 0 Job name flag file
[ ]jp_s3ohA1F.align2015-04-17 19:46 24KPSIBLAST alignment in FASTA format
[TXT]jp_s3ohA1F.als2015-04-17 19:46 1.9KAlscript command file for PS/PDF output
[ ]jp_s3ohA1F.blast.gz2015-04-17 19:46 36KCompressed PSIBLAST output file
[TXT]jp_s3ohA1F.coils.csv2015-04-17 19:46 1.1KCOILS output in CSV format
[ ]jp_s3ohA1F.coilseq.lupas_142015-04-17 19:46 7.6KCOILS output, window length 14
[ ]jp_s3ohA1F.coilseq.lupas_212015-04-17 19:46 7.6KCOILS output, window length 21
[ ]jp_s3ohA1F.coilseq.lupas_282015-04-17 19:46 7.6KCOILS output, window length 28
[ ]jp_s3ohA1F.concise2015-04-17 19:46 53KPrediction: coiled-coil, solvent, alignment
[ ]jp_s3ohA1F.concise.blc2015-04-17 19:46 26KBLC format prediction and alignment data
[ ]jp_s3ohA1F.concise.fasta2015-04-17 19:46 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_s3ohA1F.concise.pdf2015-04-17 19:46 165KPDF prediction and alignment data
[ ]jp_s3ohA1F.concise.ps2015-04-17 19:46 3.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_s3ohA1F.fasta2015-04-17 19:41 195 Input query sequence in FASTA format
[ ]jp_s3ohA1F.full_MSA.fasta2015-04-17 19:46 59KFull MSA before JPred filters in FASTA
[TXT]jp_s3ohA1F.full_MSA.fasta.noGaps.html2015-04-17 19:46 45KFull MSA before JPred filters in FASTA
[TXT]jp_s3ohA1F.full_MSA.fasta.withGaps.html2015-04-17 19:46 232KFull MSA before JPred filters in FASTA
[ ]jp_s3ohA1F.hmm2015-04-17 19:46 34KHHMer2 profile of the alignment
[TXT]jp_s3ohA1F.html2015-04-17 19:46 70KHTML prediction and alignment data
[ ]jp_s3ohA1F.input2015-04-17 18:03 187 Raw input data for analysis
[ ]jp_s3ohA1F.jalview2015-04-17 19:46 4.6KJalview annotation file for alignment
[ ]jp_s3ohA1F.jnet2015-04-17 19:46 6.6KJnet secondary structure output
[TXT]jp_s3ohA1F.profile2015-04-17 19:44 29KPSIBLAST profile from alignment
[ ]jp_s3ohA1F.pssm2015-04-17 19:46 39KPSIBLAST PSSM for Jnet
[TXT]jp_s3ohA1F.results.html2016-02-15 12:19 77KJPred results page
[TXT]jp_s3ohA1F.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_s3ohA1F.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_s3ohA1F.seq2015-04-17 18:03 195 Sequence data file
[TXT]jp_s3ohA1F.simple.html2015-04-17 19:46 1.3KBrief HTML: sequence and prediction only
[TXT]jp_s3ohA1F.svg.html2015-04-17 19:46 69KJalview SVG summary of results
[ ]jp_s3ohA1F.tar.gz2015-04-17 19:46 313KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.