JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2asba2.name2015-04-17 19:17 0 Job name flag file
[ ]jp_qBLSfmW.align2015-04-17 21:46 40KPSIBLAST alignment in FASTA format
[TXT]jp_qBLSfmW.als2015-04-17 21:46 2.2KAlscript command file for PS/PDF output
[ ]jp_qBLSfmW.blast.gz2015-04-17 21:46 418KCompressed PSIBLAST output file
[TXT]jp_qBLSfmW.coils.csv2015-04-17 21:46 504 COILS output in CSV format
[ ]jp_qBLSfmW.coilseq.lupas_142015-04-17 21:46 3.3KCOILS output, window length 14
[ ]jp_qBLSfmW.coilseq.lupas_212015-04-17 21:46 3.3KCOILS output, window length 21
[ ]jp_qBLSfmW.coilseq.lupas_282015-04-17 21:46 3.3KCOILS output, window length 28
[ ]jp_qBLSfmW.concise2015-04-17 21:46 77KPrediction: coiled-coil, solvent, alignment
[ ]jp_qBLSfmW.concise.blc2015-04-17 21:46 40KBLC format prediction and alignment data
[ ]jp_qBLSfmW.concise.fasta2015-04-17 21:46 41KPrediction: coiled-coil, solvent, alignment
[ ]jp_qBLSfmW.concise.pdf2015-04-17 21:46 259KPDF prediction and alignment data
[ ]jp_qBLSfmW.concise.ps2015-04-17 21:46 4.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_qBLSfmW.fasta2015-04-17 21:43 93 Input query sequence in FASTA format
[ ]jp_qBLSfmW.full_MSA.fasta2015-04-17 21:46 460KFull MSA before JPred filters in FASTA
[TXT]jp_qBLSfmW.full_MSA.fasta.noGaps.html2015-04-17 21:46 535KFull MSA before JPred filters in FASTA
[TXT]jp_qBLSfmW.full_MSA.fasta.withGaps.html2015-04-17 21:46 1.7MFull MSA before JPred filters in FASTA
[ ]jp_qBLSfmW.hmm2015-04-17 21:46 15KHHMer2 profile of the alignment
[TXT]jp_qBLSfmW.html2015-04-17 21:46 128KHTML prediction and alignment data
[ ]jp_qBLSfmW.input2015-04-17 19:17 86 Raw input data for analysis
[ ]jp_qBLSfmW.jalview2015-04-17 21:46 2.4KJalview annotation file for alignment
[ ]jp_qBLSfmW.jnet2015-04-17 21:46 3.0KJnet secondary structure output
[TXT]jp_qBLSfmW.profile2015-04-17 21:45 13KPSIBLAST profile from alignment
[ ]jp_qBLSfmW.pssm2015-04-17 21:46 17KPSIBLAST PSSM for Jnet
[TXT]jp_qBLSfmW.results.html2016-02-15 12:19 43KJPred results page
[TXT]jp_qBLSfmW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_qBLSfmW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_qBLSfmW.seq2015-04-17 19:17 93 Sequence data file
[TXT]jp_qBLSfmW.simple.html2015-04-17 21:46 1.2KBrief HTML: sequence and prediction only
[TXT]jp_qBLSfmW.svg.html2015-04-17 21:46 35KJalview SVG summary of results
[ ]jp_qBLSfmW.tar.gz2015-04-17 21:46 969KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.