JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_Q_2V58b.input2015-04-17 18:39 91 Raw input data for analysis
[ ]jp_Q_2V58b.seq2015-04-17 18:39 98 Sequence data file
[TXT]d2auwa2.name2015-04-17 18:39 0 Job name flag file
[ ]jp_Q_2V58b.fasta2015-04-17 20:38 98 Input query sequence in FASTA format
[TXT]jp_Q_2V58b.profile2015-04-17 20:39 14KPSIBLAST profile from alignment
[ ]jp_Q_2V58b.blast.gz2015-04-17 20:40 108KCompressed PSIBLAST output file
[ ]jp_Q_2V58b.full_MSA.fasta2015-04-17 20:40 207KFull MSA before JPred filters in FASTA
[ ]jp_Q_2V58b.align2015-04-17 20:40 60KPSIBLAST alignment in FASTA format
[ ]jp_Q_2V58b.pssm2015-04-17 20:40 18KPSIBLAST PSSM for Jnet
[ ]jp_Q_2V58b.hmm2015-04-17 20:40 16KHHMer2 profile of the alignment
[ ]jp_Q_2V58b.jnet2015-04-17 20:40 3.1KJnet secondary structure output
[ ]jp_Q_2V58b.coilseq.lupas_212015-04-17 20:40 3.5KCOILS output, window length 21
[ ]jp_Q_2V58b.coilseq.lupas_142015-04-17 20:40 3.5KCOILS output, window length 14
[ ]jp_Q_2V58b.coilseq.lupas_282015-04-17 20:40 3.5KCOILS output, window length 28
[TXT]jp_Q_2V58b.coils.csv2015-04-17 20:40 534 COILS output in CSV format
[ ]jp_Q_2V58b.concise2015-04-17 20:40 116KPrediction: coiled-coil, solvent, alignment
[TXT]jp_Q_2V58b.html2015-04-17 20:40 183KHTML prediction and alignment data
[TXT]jp_Q_2V58b.simple.html2015-04-17 20:40 1.3KBrief HTML: sequence and prediction only
[ ]jp_Q_2V58b.jalview2015-04-17 20:40 2.5KJalview annotation file for alignment
[ ]jp_Q_2V58b.concise.fasta2015-04-17 20:40 61KPrediction: coiled-coil, solvent, alignment
[ ]jp_Q_2V58b.concise.blc2015-04-17 20:40 60KBLC format prediction and alignment data
[TXT]jp_Q_2V58b.als2015-04-17 20:40 2.5KAlscript command file for PS/PDF output
[ ]jp_Q_2V58b.concise.ps2015-04-17 20:40 6.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_Q_2V58b.concise.pdf2015-04-17 20:40 389KPDF prediction and alignment data
[TXT]jp_Q_2V58b.full_MSA.fasta.withGaps.html2015-04-17 20:40 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_Q_2V58b.full_MSA.fasta.noGaps.html2015-04-17 20:40 151KFull MSA before JPred filters in FASTA
[TXT]jp_Q_2V58b.svg.html2015-04-17 20:40 38KJalview SVG summary of results
[TXT]LOG2015-04-17 20:40 4.7KJPred server log file
[ ]jp_Q_2V58b.tar.gz2015-04-17 20:40 745KArchive containing complete results
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]jp_Q_2V58b.results.html2016-02-15 12:19 46KJPred results page
[TXT]jp_Q_2V58b.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Q_2V58b.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.