JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:51 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2bhua2.name2015-04-17 15:36 0 Job name flag file
[ ]jp_lVqkyw4.align2015-04-17 15:51 735 PSIBLAST alignment in FASTA format
[TXT]jp_lVqkyw4.als2015-04-17 15:51 1.8KAlscript command file for PS/PDF output
[ ]jp_lVqkyw4.blast.gz2015-04-17 15:51 2.9KCompressed PSIBLAST output file
[TXT]jp_lVqkyw4.coils.csv2015-04-17 15:51 462 COILS output in CSV format
[ ]jp_lVqkyw4.coilseq.lupas_142015-04-17 15:51 3.0KCOILS output, window length 14
[ ]jp_lVqkyw4.coilseq.lupas_212015-04-17 15:51 3.0KCOILS output, window length 21
[ ]jp_lVqkyw4.coilseq.lupas_282015-04-17 15:51 3.0KCOILS output, window length 28
[ ]jp_lVqkyw4.concise2015-04-17 15:51 4.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_lVqkyw4.concise.blc2015-04-17 15:51 1.9KBLC format prediction and alignment data
[ ]jp_lVqkyw4.concise.fasta2015-04-17 15:51 1.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_lVqkyw4.concise.pdf2015-04-17 15:51 12KPDF prediction and alignment data
[ ]jp_lVqkyw4.concise.ps2015-04-17 15:51 185KPrediction: coiled-coil, solvent, alignment
[ ]jp_lVqkyw4.fasta2015-04-17 15:46 86 Input query sequence in FASTA format
[ ]jp_lVqkyw4.full_MSA.fasta2015-04-17 15:51 1.2KFull MSA before JPred filters in FASTA
[TXT]jp_lVqkyw4.full_MSA.fasta.noGaps.html2015-04-17 15:51 2.3KFull MSA before JPred filters in FASTA
[TXT]jp_lVqkyw4.full_MSA.fasta.withGaps.html2015-04-17 15:51 3.7KFull MSA before JPred filters in FASTA
[ ]jp_lVqkyw4.hmm2015-04-17 15:51 14KHHMer2 profile of the alignment
[TXT]jp_lVqkyw4.html2015-04-17 15:51 9.0KHTML prediction and alignment data
[ ]jp_lVqkyw4.input2015-04-17 15:36 79 Raw input data for analysis
[ ]jp_lVqkyw4.jalview2015-04-17 15:51 2.2KJalview annotation file for alignment
[ ]jp_lVqkyw4.jnet2015-04-17 15:51 2.7KJnet secondary structure output
[TXT]jp_lVqkyw4.profile2015-04-17 15:49 12KPSIBLAST profile from alignment
[ ]jp_lVqkyw4.pssm2015-04-17 15:51 15KPSIBLAST PSSM for Jnet
[TXT]jp_lVqkyw4.results.html2016-02-15 12:19 38KJPred results page
[TXT]jp_lVqkyw4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_lVqkyw4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_lVqkyw4.seq2015-04-17 15:36 86 Sequence data file
[TXT]jp_lVqkyw4.simple.html2015-04-17 15:51 1.1KBrief HTML: sequence and prediction only
[TXT]jp_lVqkyw4.svg.html2015-04-17 15:51 30KJalview SVG summary of results
[ ]jp_lVqkyw4.tar.gz2015-04-17 15:51 36KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.