JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2bogx_.name2015-04-17 19:17 0 Job name flag file
[ ]jp_m72hexw.align2015-04-17 21:50 157KPSIBLAST alignment in FASTA format
[TXT]jp_m72hexw.als2015-04-17 21:50 3.7KAlscript command file for PS/PDF output
[ ]jp_m72hexw.blast.gz2015-04-17 21:49 1.5MCompressed PSIBLAST output file
[TXT]jp_m72hexw.coils.csv2015-04-17 21:50 1.7KCOILS output in CSV format
[ ]jp_m72hexw.coilseq.lupas_142015-04-17 21:50 12KCOILS output, window length 14
[ ]jp_m72hexw.coilseq.lupas_212015-04-17 21:50 12KCOILS output, window length 21
[ ]jp_m72hexw.coilseq.lupas_282015-04-17 21:50 12KCOILS output, window length 28
[ ]jp_m72hexw.concise2015-04-17 21:50 318KPrediction: coiled-coil, solvent, alignment
[ ]jp_m72hexw.concise.blc2015-04-17 21:50 160KBLC format prediction and alignment data
[ ]jp_m72hexw.concise.fasta2015-04-17 21:50 160KPrediction: coiled-coil, solvent, alignment
[ ]jp_m72hexw.concise.pdf2015-04-17 21:50 1.0MPDF prediction and alignment data
[ ]jp_m72hexw.concise.ps2015-04-17 21:50 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_m72hexw.fasta2015-04-17 21:45 296 Input query sequence in FASTA format
[ ]jp_m72hexw.full_MSA.fasta2015-04-17 21:50 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_m72hexw.full_MSA.fasta.noGaps.html2015-04-17 21:50 351KFull MSA before JPred filters in FASTA
[TXT]jp_m72hexw.full_MSA.fasta.withGaps.html2015-04-17 21:50 6.8MFull MSA before JPred filters in FASTA
[ ]jp_m72hexw.hmm2015-04-17 21:50 53KHHMer2 profile of the alignment
[TXT]jp_m72hexw.html2015-04-17 21:50 286KHTML prediction and alignment data
[ ]jp_m72hexw.input2015-04-17 19:17 287 Raw input data for analysis
[ ]jp_m72hexw.jalview2015-04-17 21:50 6.4KJalview annotation file for alignment
[ ]jp_m72hexw.jnet2015-04-17 21:50 10KJnet secondary structure output
[TXT]jp_m72hexw.profile2015-04-17 21:48 45KPSIBLAST profile from alignment
[ ]jp_m72hexw.pssm2015-04-17 21:50 60KPSIBLAST PSSM for Jnet
[TXT]jp_m72hexw.results.html2016-02-15 12:19 119KJPred results page
[TXT]jp_m72hexw.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_m72hexw.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_m72hexw.seq2015-04-17 19:17 296 Sequence data file
[TXT]jp_m72hexw.simple.html2015-04-17 21:50 1.8KBrief HTML: sequence and prediction only
[TXT]jp_m72hexw.svg.html2015-04-17 21:50 111KJalview SVG summary of results
[ ]jp_m72hexw.tar.gz2015-04-17 21:50 3.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.