JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:39 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ca5a1.name2015-04-17 19:18 0 Job name flag file
[ ]jp_9fnygkB.align2015-04-17 22:39 4.4KPSIBLAST alignment in FASTA format
[TXT]jp_9fnygkB.als2015-04-17 22:39 1.5KAlscript command file for PS/PDF output
[ ]jp_9fnygkB.blast.gz2015-04-17 22:39 10KCompressed PSIBLAST output file
[TXT]jp_9fnygkB.coils.csv2015-04-17 22:39 384 COILS output in CSV format
[ ]jp_9fnygkB.coilseq.lupas_142015-04-17 22:39 2.5KCOILS output, window length 14
[ ]jp_9fnygkB.coilseq.lupas_212015-04-17 22:39 2.5KCOILS output, window length 21
[ ]jp_9fnygkB.coilseq.lupas_282015-04-17 22:39 2.5KCOILS output, window length 28
[ ]jp_9fnygkB.concise2015-04-17 22:39 11KPrediction: coiled-coil, solvent, alignment
[ ]jp_9fnygkB.concise.blc2015-04-17 22:39 5.3KBLC format prediction and alignment data
[ ]jp_9fnygkB.concise.fasta2015-04-17 22:39 5.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_9fnygkB.concise.pdf2015-04-17 22:39 32KPDF prediction and alignment data
[ ]jp_9fnygkB.concise.ps2015-04-17 22:39 571KPrediction: coiled-coil, solvent, alignment
[ ]jp_9fnygkB.fasta2015-04-17 21:45 72 Input query sequence in FASTA format
[ ]jp_9fnygkB.full_MSA.fasta2015-04-17 22:39 10KFull MSA before JPred filters in FASTA
[TXT]jp_9fnygkB.full_MSA.fasta.noGaps.html2015-04-17 22:39 19KFull MSA before JPred filters in FASTA
[TXT]jp_9fnygkB.full_MSA.fasta.withGaps.html2015-04-17 22:39 34KFull MSA before JPred filters in FASTA
[ ]jp_9fnygkB.hmm2015-04-17 22:39 11KHHMer2 profile of the alignment
[TXT]jp_9fnygkB.html2015-04-17 22:39 24KHTML prediction and alignment data
[ ]jp_9fnygkB.input2015-04-17 19:18 66 Raw input data for analysis
[ ]jp_9fnygkB.jalview2015-04-17 22:39 2.1KJalview annotation file for alignment
[ ]jp_9fnygkB.jnet2015-04-17 22:39 2.2KJnet secondary structure output
[TXT]jp_9fnygkB.profile2015-04-17 22:25 9.8KPSIBLAST profile from alignment
[ ]jp_9fnygkB.pssm2015-04-17 22:39 13KPSIBLAST PSSM for Jnet
[TXT]jp_9fnygkB.results.html2016-02-15 12:19 33KJPred results page
[TXT]jp_9fnygkB.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_9fnygkB.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_9fnygkB.seq2015-04-17 19:18 72 Sequence data file
[TXT]jp_9fnygkB.simple.html2015-04-17 22:39 1.0KBrief HTML: sequence and prediction only
[TXT]jp_9fnygkB.svg.html2015-04-17 22:39 25KJalview SVG summary of results
[ ]jp_9fnygkB.tar.gz2015-04-17 22:39 72KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.