JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2cg7a1.name2015-04-17 17:27 0 Job name flag file
[ ]jp_GHJDxCu.align2015-04-17 18:47 8.1KPSIBLAST alignment in FASTA format
[TXT]jp_GHJDxCu.als2015-04-17 18:47 1.8KAlscript command file for PS/PDF output
[ ]jp_GHJDxCu.blast.gz2015-04-17 18:47 30KCompressed PSIBLAST output file
[TXT]jp_GHJDxCu.coils.csv2015-04-17 18:47 288 COILS output in CSV format
[ ]jp_GHJDxCu.coilseq.lupas_142015-04-17 18:47 1.8KCOILS output, window length 14
[ ]jp_GHJDxCu.coilseq.lupas_212015-04-17 18:47 1.8KCOILS output, window length 21
[ ]jp_GHJDxCu.coilseq.lupas_282015-04-17 18:47 1.8KCOILS output, window length 28
[ ]jp_GHJDxCu.concise2015-04-17 18:47 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_GHJDxCu.concise.blc2015-04-17 18:47 8.7KBLC format prediction and alignment data
[ ]jp_GHJDxCu.concise.fasta2015-04-17 18:47 8.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_GHJDxCu.concise.pdf2015-04-17 18:47 35KPDF prediction and alignment data
[ ]jp_GHJDxCu.concise.ps2015-04-17 18:47 777KPrediction: coiled-coil, solvent, alignment
[ ]jp_GHJDxCu.fasta2015-04-17 18:39 56 Input query sequence in FASTA format
[ ]jp_GHJDxCu.full_MSA.fasta2015-04-17 18:47 54KFull MSA before JPred filters in FASTA
[TXT]jp_GHJDxCu.full_MSA.fasta.noGaps.html2015-04-17 18:47 126KFull MSA before JPred filters in FASTA
[TXT]jp_GHJDxCu.full_MSA.fasta.withGaps.html2015-04-17 18:47 257KFull MSA before JPred filters in FASTA
[ ]jp_GHJDxCu.hmm2015-04-17 18:47 8.1KHHMer2 profile of the alignment
[TXT]jp_GHJDxCu.html2015-04-17 18:47 38KHTML prediction and alignment data
[ ]jp_GHJDxCu.input2015-04-17 17:27 50 Raw input data for analysis
[ ]jp_GHJDxCu.jalview2015-04-17 18:47 1.7KJalview annotation file for alignment
[ ]jp_GHJDxCu.jnet2015-04-17 18:47 1.7KJnet secondary structure output
[TXT]jp_GHJDxCu.profile2015-04-17 18:44 7.3KPSIBLAST profile from alignment
[ ]jp_GHJDxCu.pssm2015-04-17 18:47 9.2KPSIBLAST PSSM for Jnet
[TXT]jp_GHJDxCu.results.html2016-02-15 12:19 28KJPred results page
[TXT]jp_GHJDxCu.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_GHJDxCu.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_GHJDxCu.seq2015-04-17 17:27 56 Sequence data file
[TXT]jp_GHJDxCu.simple.html2015-04-17 18:47 1.0KBrief HTML: sequence and prediction only
[TXT]jp_GHJDxCu.svg.html2015-04-17 18:48 20KJalview SVG summary of results
[ ]jp_GHJDxCu.tar.gz2015-04-17 18:48 104KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.