JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:20 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2choa1.name2015-04-17 17:28 0 Job name flag file
[ ]jp_D0_qBEM.align2015-04-17 19:20 49KPSIBLAST alignment in FASTA format
[TXT]jp_D0_qBEM.als2015-04-17 19:20 2.2KAlscript command file for PS/PDF output
[ ]jp_D0_qBEM.blast.gz2015-04-17 19:20 103KCompressed PSIBLAST output file
[TXT]jp_D0_qBEM.coils.csv2015-04-17 19:20 954 COILS output in CSV format
[ ]jp_D0_qBEM.coilseq.lupas_142015-04-17 19:20 6.5KCOILS output, window length 14
[ ]jp_D0_qBEM.coilseq.lupas_212015-04-17 19:20 6.5KCOILS output, window length 21
[ ]jp_D0_qBEM.coilseq.lupas_282015-04-17 19:20 6.5KCOILS output, window length 28
[ ]jp_D0_qBEM.concise2015-04-17 19:20 101KPrediction: coiled-coil, solvent, alignment
[ ]jp_D0_qBEM.concise.blc2015-04-17 19:20 51KBLC format prediction and alignment data
[ ]jp_D0_qBEM.concise.fasta2015-04-17 19:20 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_D0_qBEM.concise.pdf2015-04-17 19:20 320KPDF prediction and alignment data
[ ]jp_D0_qBEM.concise.ps2015-04-17 19:20 5.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_D0_qBEM.fasta2015-04-17 18:40 169 Input query sequence in FASTA format
[ ]jp_D0_qBEM.full_MSA.fasta2015-04-17 19:20 209KFull MSA before JPred filters in FASTA
[TXT]jp_D0_qBEM.full_MSA.fasta.noGaps.html2015-04-17 19:20 96KFull MSA before JPred filters in FASTA
[TXT]jp_D0_qBEM.full_MSA.fasta.withGaps.html2015-04-17 19:20 1.0MFull MSA before JPred filters in FASTA
[ ]jp_D0_qBEM.hmm2015-04-17 19:20 29KHHMer2 profile of the alignment
[TXT]jp_D0_qBEM.html2015-04-17 19:20 123KHTML prediction and alignment data
[ ]jp_D0_qBEM.input2015-04-17 17:28 161 Raw input data for analysis
[ ]jp_D0_qBEM.jalview2015-04-17 19:20 4.0KJalview annotation file for alignment
[ ]jp_D0_qBEM.jnet2015-04-17 19:20 5.7KJnet secondary structure output
[TXT]jp_D0_qBEM.profile2015-04-17 19:09 25KPSIBLAST profile from alignment
[ ]jp_D0_qBEM.pssm2015-04-17 19:20 33KPSIBLAST PSSM for Jnet
[TXT]jp_D0_qBEM.results.html2016-02-15 12:19 69KJPred results page
[TXT]jp_D0_qBEM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_D0_qBEM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_D0_qBEM.seq2015-04-17 17:28 169 Sequence data file
[TXT]jp_D0_qBEM.simple.html2015-04-17 19:20 1.3KBrief HTML: sequence and prediction only
[TXT]jp_D0_qBEM.svg.html2015-04-17 19:20 61KJalview SVG summary of results
[ ]jp_D0_qBEM.tar.gz2015-04-17 19:20 636KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.