JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:58 5.0KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2csba5.name2015-04-17 16:16 0 Job name flag file
[ ]jp_COaakYT.align2015-04-17 16:58 616 PSIBLAST alignment in FASTA format
[TXT]jp_COaakYT.als2015-04-17 16:58 4.3KAlscript command file for PS/PDF output
[ ]jp_COaakYT.blast.gz2015-04-17 16:58 1.8KCompressed PSIBLAST output file
[TXT]jp_COaakYT.coils.csv2015-04-17 16:58 1.7KCOILS output in CSV format
[ ]jp_COaakYT.coilseq.lupas_142015-04-17 16:58 12KCOILS output, window length 14
[ ]jp_COaakYT.coilseq.lupas_212015-04-17 16:58 12KCOILS output, window length 21
[ ]jp_COaakYT.coilseq.lupas_282015-04-17 16:58 12KCOILS output, window length 28
[ ]jp_COaakYT.concise2015-04-17 16:58 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_COaakYT.concise.blc2015-04-17 16:58 4.9KBLC format prediction and alignment data
[ ]jp_COaakYT.concise.fasta2015-04-17 16:58 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_COaakYT.concise.pdf2015-04-17 16:58 32KPDF prediction and alignment data
[ ]jp_COaakYT.concise.ps2015-04-17 16:58 590KPrediction: coiled-coil, solvent, alignment
[ ]jp_COaakYT.fasta2015-04-17 16:43 308 Input query sequence in FASTA format
[ ]jp_COaakYT.full_MSA.fasta2015-04-17 16:58 616 Full MSA before JPred filters in FASTA
[TXT]jp_COaakYT.full_MSA.fasta.noGaps.html2015-04-17 16:58 705 Full MSA before JPred filters in FASTA
[TXT]jp_COaakYT.full_MSA.fasta.withGaps.html2015-04-17 16:58 705 Full MSA before JPred filters in FASTA
[ ]jp_COaakYT.hmm2015-04-17 16:58 55KHHMer2 profile of the alignment
[TXT]jp_COaakYT.html2015-04-17 16:58 28KHTML prediction and alignment data
[ ]jp_COaakYT.input2015-04-17 16:16 298 Raw input data for analysis
[ ]jp_COaakYT.jalview2015-04-17 16:58 6.7KJalview annotation file for alignment
[ ]jp_COaakYT.jnet2015-04-17 16:58 11KJnet secondary structure output
[TXT]jp_COaakYT.profile2015-04-17 16:52 47KPSIBLAST profile from alignment
[ ]jp_COaakYT.pssm2015-04-17 16:58 63KPSIBLAST PSSM for Jnet
[TXT]jp_COaakYT.results.html2016-02-15 12:19 128KJPred results page
[TXT]jp_COaakYT.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_COaakYT.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_COaakYT.seq2015-04-17 16:16 308 Sequence data file
[TXT]jp_COaakYT.simple.html2015-04-17 16:58 2.0KBrief HTML: sequence and prediction only
[TXT]jp_COaakYT.svg.html2015-04-17 16:58 120KJalview SVG summary of results
[ ]jp_COaakYT.tar.gz2015-04-17 16:58 69KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.