JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2czra1.name2015-04-17 17:28 0 Job name flag file
[ ]jp_bBL0YBF.align2015-04-17 18:42 2.1KPSIBLAST alignment in FASTA format
[TXT]jp_bBL0YBF.als2015-04-17 18:43 4.3KAlscript command file for PS/PDF output
[ ]jp_bBL0YBF.blast.gz2015-04-17 18:42 3.9KCompressed PSIBLAST output file
[TXT]jp_bBL0YBF.coils.csv2015-04-17 18:43 1.3KCOILS output in CSV format
[ ]jp_bBL0YBF.coilseq.lupas_142015-04-17 18:43 9.2KCOILS output, window length 14
[ ]jp_bBL0YBF.coilseq.lupas_212015-04-17 18:43 9.2KCOILS output, window length 21
[ ]jp_bBL0YBF.coilseq.lupas_282015-04-17 18:43 9.2KCOILS output, window length 28
[ ]jp_bBL0YBF.concise2015-04-17 18:43 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_bBL0YBF.concise.blc2015-04-17 18:43 5.4KBLC format prediction and alignment data
[ ]jp_bBL0YBF.concise.fasta2015-04-17 18:43 4.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_bBL0YBF.concise.pdf2015-04-17 18:43 36KPDF prediction and alignment data
[ ]jp_bBL0YBF.concise.ps2015-04-17 18:43 638KPrediction: coiled-coil, solvent, alignment
[ ]jp_bBL0YBF.fasta2015-04-17 18:41 234 Input query sequence in FASTA format
[ ]jp_bBL0YBF.full_MSA.fasta2015-04-17 18:42 4.0KFull MSA before JPred filters in FASTA
[TXT]jp_bBL0YBF.full_MSA.fasta.noGaps.html2015-04-17 18:43 5.8KFull MSA before JPred filters in FASTA
[TXT]jp_bBL0YBF.full_MSA.fasta.withGaps.html2015-04-17 18:43 7.8KFull MSA before JPred filters in FASTA
[ ]jp_bBL0YBF.hmm2015-04-17 18:42 41KHHMer2 profile of the alignment
[TXT]jp_bBL0YBF.html2015-04-17 18:43 24KHTML prediction and alignment data
[ ]jp_bBL0YBF.input2015-04-17 17:28 225 Raw input data for analysis
[ ]jp_bBL0YBF.jalview2015-04-17 18:43 5.2KJalview annotation file for alignment
[ ]jp_bBL0YBF.jnet2015-04-17 18:43 8.0KJnet secondary structure output
[TXT]jp_bBL0YBF.profile2015-04-17 18:41 35KPSIBLAST profile from alignment
[ ]jp_bBL0YBF.pssm2015-04-17 18:42 47KPSIBLAST PSSM for Jnet
[TXT]jp_bBL0YBF.results.html2016-02-15 12:19 100KJPred results page
[TXT]jp_bBL0YBF.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_bBL0YBF.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_bBL0YBF.seq2015-04-17 17:28 234 Sequence data file
[TXT]jp_bBL0YBF.simple.html2015-04-17 18:43 1.9KBrief HTML: sequence and prediction only
[TXT]jp_bBL0YBF.svg.html2015-04-17 18:43 92KJalview SVG summary of results
[ ]jp_bBL0YBF.tar.gz2015-04-17 18:43 89KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.