JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ebfx1.name2015-04-17 18:05 0 Job name flag file
[ ]jp_blNaSGb.align2015-04-17 19:49 6.3KPSIBLAST alignment in FASTA format
[TXT]jp_blNaSGb.als2015-04-17 19:49 4.0KAlscript command file for PS/PDF output
[ ]jp_blNaSGb.blast.gz2015-04-17 19:49 34KCompressed PSIBLAST output file
[TXT]jp_blNaSGb.coils.csv2015-04-17 19:49 1.8KCOILS output in CSV format
[ ]jp_blNaSGb.coilseq.lupas_142015-04-17 19:49 13KCOILS output, window length 14
[ ]jp_blNaSGb.coilseq.lupas_212015-04-17 19:49 13KCOILS output, window length 21
[ ]jp_blNaSGb.coilseq.lupas_282015-04-17 19:49 13KCOILS output, window length 28
[ ]jp_blNaSGb.concise2015-04-17 19:49 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_blNaSGb.concise.blc2015-04-17 19:49 11KBLC format prediction and alignment data
[ ]jp_blNaSGb.concise.fasta2015-04-17 19:49 9.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_blNaSGb.concise.pdf2015-04-17 19:49 71KPDF prediction and alignment data
[ ]jp_blNaSGb.concise.ps2015-04-17 19:49 1.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_blNaSGb.fasta2015-04-17 19:44 317 Input query sequence in FASTA format
[ ]jp_blNaSGb.full_MSA.fasta2015-04-17 19:49 89KFull MSA before JPred filters in FASTA
[TXT]jp_blNaSGb.full_MSA.fasta.noGaps.html2015-04-17 19:49 69KFull MSA before JPred filters in FASTA
[TXT]jp_blNaSGb.full_MSA.fasta.withGaps.html2015-04-17 19:49 363KFull MSA before JPred filters in FASTA
[ ]jp_blNaSGb.hmm2015-04-17 19:49 56KHHMer2 profile of the alignment
[TXT]jp_blNaSGb.html2015-04-17 19:49 38KHTML prediction and alignment data
[ ]jp_blNaSGb.input2015-04-17 18:05 307 Raw input data for analysis
[ ]jp_blNaSGb.jalview2015-04-17 19:49 6.9KJalview annotation file for alignment
[ ]jp_blNaSGb.jnet2015-04-17 19:49 11KJnet secondary structure output
[TXT]jp_blNaSGb.profile2015-04-17 19:47 48KPSIBLAST profile from alignment
[ ]jp_blNaSGb.pssm2015-04-17 19:49 64KPSIBLAST PSSM for Jnet
[TXT]jp_blNaSGb.results.html2016-02-15 12:19 130KJPred results page
[TXT]jp_blNaSGb.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_blNaSGb.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_blNaSGb.seq2015-04-17 18:05 317 Sequence data file
[TXT]jp_blNaSGb.simple.html2015-04-17 19:49 1.9KBrief HTML: sequence and prediction only
[TXT]jp_blNaSGb.svg.html2015-04-17 19:49 122KJalview SVG summary of results
[ ]jp_blNaSGb.tar.gz2015-04-17 19:50 208KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.