JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ed6a1.name2015-04-17 16:51 0 Job name flag file
[ ]jp_eldcVDz.align2015-04-17 17:45 370 PSIBLAST alignment in FASTA format
[TXT]jp_eldcVDz.als2015-04-17 17:45 3.1KAlscript command file for PS/PDF output
[ ]jp_eldcVDz.blast.gz2015-04-17 17:45 1.8KCompressed PSIBLAST output file
[TXT]jp_eldcVDz.coils.csv2015-04-17 17:45 1.0KCOILS output in CSV format
[ ]jp_eldcVDz.coilseq.lupas_142015-04-17 17:45 7.1KCOILS output, window length 14
[ ]jp_eldcVDz.coilseq.lupas_212015-04-17 17:45 7.1KCOILS output, window length 21
[ ]jp_eldcVDz.coilseq.lupas_282015-04-17 17:45 7.1KCOILS output, window length 28
[ ]jp_eldcVDz.concise2015-04-17 17:45 8.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_eldcVDz.concise.blc2015-04-17 17:45 2.9KBLC format prediction and alignment data
[ ]jp_eldcVDz.concise.fasta2015-04-17 17:45 2.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_eldcVDz.concise.pdf2015-04-17 17:45 18KPDF prediction and alignment data
[ ]jp_eldcVDz.concise.ps2015-04-17 17:45 320KPrediction: coiled-coil, solvent, alignment
[ ]jp_eldcVDz.fasta2015-04-17 17:44 185 Input query sequence in FASTA format
[ ]jp_eldcVDz.full_MSA.fasta2015-04-17 17:45 575 Full MSA before JPred filters in FASTA
[TXT]jp_eldcVDz.full_MSA.fasta.noGaps.html2015-04-17 17:45 888 Full MSA before JPred filters in FASTA
[TXT]jp_eldcVDz.full_MSA.fasta.withGaps.html2015-04-17 17:45 1.0KFull MSA before JPred filters in FASTA
[ ]jp_eldcVDz.hmm2015-04-17 17:45 32KHHMer2 profile of the alignment
[TXT]jp_eldcVDz.html2015-04-17 17:45 16KHTML prediction and alignment data
[ ]jp_eldcVDz.input2015-04-17 16:51 177 Raw input data for analysis
[ ]jp_eldcVDz.jalview2015-04-17 17:45 4.2KJalview annotation file for alignment
[ ]jp_eldcVDz.jnet2015-04-17 17:45 6.3KJnet secondary structure output
[TXT]jp_eldcVDz.profile2015-04-17 17:44 28KPSIBLAST profile from alignment
[ ]jp_eldcVDz.pssm2015-04-17 17:45 37KPSIBLAST PSSM for Jnet
[TXT]jp_eldcVDz.results.html2016-02-15 12:19 77KJPred results page
[TXT]jp_eldcVDz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_eldcVDz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_eldcVDz.seq2015-04-17 16:51 185 Sequence data file
[TXT]jp_eldcVDz.simple.html2015-04-17 17:45 1.5KBrief HTML: sequence and prediction only
[TXT]jp_eldcVDz.svg.html2015-04-17 17:45 69KJalview SVG summary of results
[ ]jp_eldcVDz.tar.gz2015-04-17 17:45 51KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.