JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fefa1.name2015-04-17 16:18 0 Job name flag file
[ ]jp_LfBafs1.align2015-04-17 16:46 419 PSIBLAST alignment in FASTA format
[TXT]jp_LfBafs1.als2015-04-17 16:46 1.8KAlscript command file for PS/PDF output
[ ]jp_LfBafs1.blast.gz2015-04-17 16:46 2.2KCompressed PSIBLAST output file
[TXT]jp_LfBafs1.coils.csv2015-04-17 16:46 774 COILS output in CSV format
[ ]jp_LfBafs1.coilseq.lupas_142015-04-17 16:46 5.2KCOILS output, window length 14
[ ]jp_LfBafs1.coilseq.lupas_212015-04-17 16:46 5.2KCOILS output, window length 21
[ ]jp_LfBafs1.coilseq.lupas_282015-04-17 16:46 5.2KCOILS output, window length 28
[ ]jp_LfBafs1.concise2015-04-17 16:46 6.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_LfBafs1.concise.blc2015-04-17 16:46 2.3KBLC format prediction and alignment data
[ ]jp_LfBafs1.concise.fasta2015-04-17 16:46 1.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_LfBafs1.concise.pdf2015-04-17 16:46 17KPDF prediction and alignment data
[ ]jp_LfBafs1.concise.ps2015-04-17 16:46 273KPrediction: coiled-coil, solvent, alignment
[ ]jp_LfBafs1.fasta2015-04-17 16:45 138 Input query sequence in FASTA format
[ ]jp_LfBafs1.full_MSA.fasta2015-04-17 16:46 1.0KFull MSA before JPred filters in FASTA
[TXT]jp_LfBafs1.full_MSA.fasta.noGaps.html2015-04-17 16:46 1.8KFull MSA before JPred filters in FASTA
[TXT]jp_LfBafs1.full_MSA.fasta.withGaps.html2015-04-17 16:46 1.8KFull MSA before JPred filters in FASTA
[ ]jp_LfBafs1.hmm2015-04-17 16:46 23KHHMer2 profile of the alignment
[TXT]jp_LfBafs1.html2015-04-17 16:46 16KHTML prediction and alignment data
[ ]jp_LfBafs1.input2015-04-17 16:18 131 Raw input data for analysis
[ ]jp_LfBafs1.jalview2015-04-17 16:46 3.4KJalview annotation file for alignment
[ ]jp_LfBafs1.jnet2015-04-17 16:46 4.6KJnet secondary structure output
[TXT]jp_LfBafs1.profile2015-04-17 16:45 20KPSIBLAST profile from alignment
[ ]jp_LfBafs1.pssm2015-04-17 16:46 27KPSIBLAST PSSM for Jnet
[TXT]jp_LfBafs1.results.html2016-02-15 12:19 58KJPred results page
[TXT]jp_LfBafs1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_LfBafs1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_LfBafs1.seq2015-04-17 16:18 138 Sequence data file
[TXT]jp_LfBafs1.simple.html2015-04-17 16:46 1.2KBrief HTML: sequence and prediction only
[TXT]jp_LfBafs1.svg.html2015-04-17 16:46 50KJalview SVG summary of results
[ ]jp_LfBafs1.tar.gz2015-04-17 16:46 46KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.